PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.W2VKX

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 226aa MW: 24559.3 Da PI: 6.7421

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.W2VKX	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105.3	5.1e-33	7	85	1	79
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +CaaCk+lrr+C+++C++apyfpa++p++f++vh++FGasnv ++l+alp+++reda++s +++Aea +r PvyG++ Aradu.W2VKX 7 PCAACKFLRRECTPECIFAPYFPANNPERFECVHRVFGASNVGNILNALPPSQREDAAKSFAFQAEASLRSPVYGCTLQ 85 7***************************************************************************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.573	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-32	7	85	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSSTPTPCAA CKFLRRECTP ECIFAPYFPA NNPERFECVH RVFGASNVGN ILNALPPSQR 60 EDAAKSFAFQ AEASLRSPVY GCTLQVPKRE PSASMNPQAI QGPFNPQEKP LSSPPAHLGP 120 PCGPNVVQYS AHLGPFKQEM LQAQELDLLQ AQELAAAKQV KMEVKMEPVA GIEPAAAAAP 180 YGGDIRRSEV NPVVALKLMF DNVMLTPKQS PFVLVLSQSI ERDIFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-32	7	83	11	87	LOB family transfactor Ramosa2.1
5ly0_B	8e-32	7	83	11	87	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.W2VKX

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025683011.1	1e-137	LOB domain-containing protein 36
TrEMBL	A0A445EXG6	1e-136	A0A445EXG6_ARAHY; Uncharacterized protein
STRING	XP_007155957.1	5e-37	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	5e-36	LBD family protein