PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.W3YFQ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 252aa    MW: 27379.5 Da    PI: 7.5648
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.W3YFQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA511.9e-16164201136
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                  C++Cg ++  Tp++Rrgp+g+++LCnaCGl++  +g++
  Aradu.W3YFQ 164 CTHCGISSkaTPMMRRGPSGPRSLCNACGLFWSNRGTM 201
                  *****9999*************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009793.9E-53363IPR010399Tify domain
PfamPF062004.6E-63756IPR010399Tify domain
PfamPF062033.4E-1696138IPR010402CCT domain
PROSITE profilePS5101712.6596138IPR010402CCT domain
PROSITE profilePS5011410.264158209IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-14158211IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-12161218No hitNo description
Gene3DG3DSA:3.30.50.108.4E-16162205IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.04E-14163209No hitNo description
PROSITE patternPS003440164191IPR000679Zinc finger, GATA-type
PfamPF003201.2E-13164201IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MYGSMNDGAG GVVEDADTVY VSGGGGPDMS IIPCEDSSQL TLSFRGQVYV FDSVQAVLLL  60
LGGCEMPSSG SQCAELSPQN QRGAVEFPGR CSQPHRAASL NRFRQKRKER CFDKKVRYSV  120
RQEVALRMQR NKGQFTSSKK QDGANSCGSD QESMQDAVQS ETSCTHCGIS SKATPMMRRG  180
PSGPRSLCNA CGLFWSNRGT MRDLSKRNQE HTLALPEPVN EGNNTDCRTA VPENINVTAF  240
SENDNASLAT DR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.W3YFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015935014.10.0GATA transcription factor 25
SwissprotQ9LRH62e-86GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A445BTU31e-180A0A445BTU3_ARAHY; Uncharacterized protein
TrEMBLA0A445C9341e-180A0A445C934_ARAHY; Uncharacterized protein
STRINGXP_007141281.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.29e-89GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]