PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.W5KRK
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 346aa    MW: 38895.6 Da    PI: 7.9164
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.W5KRKgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.85e-4174150278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC+ dls+++eyhrrh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  Aradu.W5KRK  74 CLVDGCSFDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 150
                  **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.1E-3367135IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.64171148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-3873153IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3074147IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDWDWKEFAW DASELDPSHK NSNSEEASSV DLRLAGEASD LEKKEEESSI RTVSSSSSSA  60
KRSRLQNGPQ NLSCLVDGCS FDLSDCREYH RRHRVCEKHS KTPVVLVGGK QQRFCQQCSR  120
FHSLGEFDEV KRSCRKRLDG HNRRRRKPQP PSFLMSSEKF MYNYKGPRIL HFGNPQPYAN  180
PIVRNMWPAA SISGAKAEYD HHRFLYRIDK HRQDKELLLW QDNVPKSFNE STAMPGTPIH  240
QPICGSTIAP STTAKLGLKK PLPSDGKPGC FDAGCALYLL STIQTQTQSP SSGTEQFDAA  300
VDKPGSHQVL VLDANTTNLH CNGMLQMGHD GLVENGDSLA LPFFWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-26741471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130147KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.W5KRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122340.0KF312234.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015971305.10.0squamosa promoter-binding-like protein 18
RefseqXP_020980782.10.0squamosa promoter-binding-like protein 18
RefseqXP_025606035.10.0squamosa promoter-binding-like protein 18
RefseqXP_025606036.10.0squamosa promoter-binding-like protein 18
TrEMBLA0A445CTV10.0A0A445CTV1_ARAHY; Uncharacterized protein
STRINGGLYMA19G26390.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-42SBP family protein