PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.W74FU

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 234aa MW: 26236.1 Da PI: 6.1601

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.W74FU	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.4e-06	190	212	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H ++H Aradu.W74FU 190 FVCEICKKGFQRDQNLQLHWQRH 212 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81660	1.24E-15	22	148	IPR023299	P-type ATPase, cytoplasmic domain N
Pfam	PF13246	1.1E-6	33	106	No hit	No description
Gene3D	G3DSA:3.40.1110.10	1.2E-8	69	141	IPR023299	P-type ATPase, cytoplasmic domain N
Gene3D	G3DSA:3.30.160.60	3.8E-4	189	212	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.71E-5	189	213	No hit	No description
PROSITE profile	PS50157	9.806	190	212	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	192	212	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
RKKEAEIKGT ESAEKLKTEI PEEAIFQNTS SEVVKDKTDN NTILGTATES ILLEFGLLED 60 GDLMHIVEPS NSVRNKMSVL VSLPNRGVRA FCKGASEIIL RICDKIIDSN GNDVDLPEEQ 120 ANKVNALRTL SVVVKDIDAT EGENSILDNG YTLIIVGLKR EFVLTSVIHA DSKAEVIAPS 180 PKSLMAMNRF VCEICKKGFQ RDQNLQLHWQ RHNLPWKLRQ REKEVVVRKK VDEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	229	RQREKEVVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol into small vacuoles.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.W74FU

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020971580.1	5e-69	calcium-transporting ATPase 4, plasma membrane-type isoform X2
Refseq	XP_025633125.1	6e-69	calcium-transporting ATPase 4, plasma membrane-type
Swissprot	O22218	2e-35	ACA4_ARATH; Calcium-transporting ATPase 4, plasma membrane-type
TrEMBL	A0A445AHT7	4e-68	A0A445AHT7_ARAHY; Calcium-transporting ATPase
STRING	XP_004498043.1	4e-52	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-21	C2H2-like zinc finger protein

Publications ? help Back to Top
Geisler M,Frangne N,Gomès E,Martinoia E,Palmgren MG The ACA4 gene of Arabidopsis encodes a vacuolar membrane calcium pump that improves salt tolerance in yeast. Plant Physiol., 2000. 124(4): p. 1814-27 [PMID:11115896] Axelsen KB,Palmgren MG Inventory of the superfamily of P-type ion pumps in Arabidopsis. Plant Physiol., 2001. 126(2): p. 696-706 [PMID:11402198] Baxter I, et al. Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice. Plant Physiol., 2003. 132(2): p. 618-28 [PMID:12805592] Hammes UZ, et al. Nematode-induced changes of transporter gene expression in Arabidopsis roots. Mol. Plant Microbe Interact., 2005. 18(12): p. 1247-57 [PMID:16478044] Endler A, et al. Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach. Plant Physiol., 2006. 141(1): p. 196-207 [PMID:16581873] Lee SM, et al. Identification of a calmodulin-regulated autoinhibited Ca2+-ATPase (ACA11) that is localized to vacuole membranes in Arabidopsis. FEBS Lett., 2007. 581(21): p. 3943-9 [PMID:17662727] Boursiac Y, et al. Disruption of the vacuolar calcium-ATPases in Arabidopsis results in the activation of a salicylic acid-dependent programmed cell death pathway. Plant Physiol., 2010. 154(3): p. 1158-71 [PMID:20837703] Conn SJ, et al. Cell-specific vacuolar calcium storage mediated by CAX1 regulates apoplastic calcium concentration, gas exchange, and plant productivity in Arabidopsis. Plant Cell, 2011. 23(1): p. 240-57 [PMID:21258004] Gfeller A, et al. Jasmonate controls polypeptide patterning in undamaged tissue in wounded Arabidopsis leaves. Plant Physiol., 2011. 156(4): p. 1797-807 [PMID:21693672]