PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.W9WVE

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 587aa MW: 63589.7 Da PI: 9.8754

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.W9WVE	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	31.5	3.9e-10	313	337	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 prl+Wtp+LH +Fv++v++LGG+e Aradu.W9WVE 313 PRLCWTPNLHLSFVHVVQRLGGQES 337 8*********************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-8	309	338	IPR009057	Homeodomain-like
SuperFamily	SSF53098	2.02E-6	388	458	IPR012337	Ribonuclease H-like domain
Pfam	PF13456	6.6E-5	484	539	No hit	No description
SuperFamily	SSF53098	1.19E-5	494	544	IPR012337	Ribonuclease H-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
FGVFDGNVTA QLKKSVAPIG GKEIGGTDFW EREVLKSVAP IGDPLPHVAH AAGSRGGPPL 60 HHTARRHVHL TLTPSPSSNP HTHPSFCRTQ PRAINDLSHP TLAPSTQPSL DSEPSIGAAP 120 STHSVVSVSA CPPTPSVVSV SQTLVGFGTS IVAHSISQTL NRRSSLRGSA PVALPSPSLK 180 SSRRRLPLPH SSHLRQPCST FAVPCCGSAQ LLICGAHSLS LFFAESRLAE NTSRFFARLF 240 EVDCDFFLLY SLQGVPSLFS DLSSLYNQPG KADILEQLIL VFFFTALFKL SSTASREGKR 300 GSGVRQYVRS KMPRLCWTPN LHLSFVHVVQ RLGGQESNST LKHFDSSVLC LSSEYATIVV 360 LALVLEKLKP YGGLQESFES AKAISVGASK GVQRLGNQLL MVLQNTKIKL HLRLREGVGI 420 APCNAAEYRA VILGMRYALK KGFSFIRIQG DSKLVCMQGA RSEPISVQDI ALQSQALLNV 480 KDSNKELLSS ICRLREGVGI APCNAAEYRA MILGMRYALK KGFSFIRIQG DSKLVCMQVG 540 HLLCLHQLVY SVLMHTGYCC PTASTPLIAI QELRATIRVL QISLDVV

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

FGVFDGNVTA QLKKSVAPIG GKEIGGTDFW EREVLKSVAP IGDPLPHVAH AAGSRGGPPL  60
HHTARRHVHL TLTPSPSSNP HTHPSFCRTQ PRAINDLSHP TLAPSTQPSL DSEPSIGAAP  120
STHSVVSVSA CPPTPSVVSV SQTLVGFGTS IVAHSISQTL NRRSSLRGSA PVALPSPSLK  180
SSRRRLPLPH SSHLRQPCST FAVPCCGSAQ LLICGAHSLS LFFAESRLAE NTSRFFARLF  240
EVDCDFFLLY SLQGVPSLFS DLSSLYNQPG KADILEQLIL VFFFTALFKL SSTASREGKR  300
GSGVRQYVRS KMPRLCWTPN LHLSFVHVVQ RLGGQESNST LKHFDSSVLC LSSEYATIVV  360
LALVLEKLKP YGGLQESFES AKAISVGASK GVQRLGNQLL MVLQNTKIKL HLRLREGVGI  420
APCNAAEYRA VILGMRYALK KGFSFIRIQG DSKLVCMQGA RSEPISVQDI ALQSQALLNV  480
KDSNKELLSS ICRLREGVGI APCNAAEYRA MILGMRYALK KGFSFIRIQG DSKLVCMQVG  540
HLLCLHQLVY SVLMHTGYCC PTASTPLIAI QELRATIRVL QISLDVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.W9WVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235188	2e-45	AC235188.1 Glycine max strain Williams 82 clone GM_WBb0010N12, complete sequence.
GenBank	AC235309	2e-45	AC235309.1 Glycine max strain Williams 82 clone GM_WBb0069M12, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16623	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-11	G2-like family protein