PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WAC97
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 426aa    MW: 48568.2 Da    PI: 9.9428
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WAC97genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.22.3e-171195189
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                 kfY++YAk +GFs+r+++++++  ++ei+++  +Cs+egk +++ +    +++t+ +   +C a++ ++  k  g w + k++l+H+H++
  Aradu.WAC97 11 KFYRNYAKAAGFSTRVRSTNRK--KNEIKNQLITCSREGKWKSKISP---TEKTNLTAGLNCLARIYIHTLKdVGSWIILKVVLDHSHPC 95
                 6****************98887..6679*************998877...89999*************998879**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-141196IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.137229265IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-5230262IPR007527Zinc finger, SWIM-type
SMARTSM005750.001240267IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MTFTTLEDAG KFYRNYAKAA GFSTRVRSTN RKKNEIKNQL ITCSREGKWK SKISPTEKTN  60
LTAGLNCLAR IYIHTLKDVG SWIILKVVLD HSHPCRPSKA EMLKQHRKLS MSICRTIENN  120
KEAGMRSTQR SESMHSFFNK FITQNCSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  180
ATKSSIEAQF QDVYSHQKFR EVQALTNSAI GYSVYEVREQ VFSSIFNKFV VTYDSVAAEI  240
KCQCLLFESR GILCRHALSV LSFEQVKRRH THIKSSHDEP LLDPRSKRFD QLVFRLQNIY  300
EFASESEELT AILHRAYDNV MAEMESLKAK RKGTSSLSHE DANLESVNEL QSPPKIRTRG  360
RPKNRLGSKL DKQIGNATKK KKTKVLSEIN LFDAASVVHS NSSQYQGHVM NYQFRAPAAG  420
DNSLSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WAC97
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-170HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445ESL40.0A0A445ESL4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.25e-20far-red elongated hypocotyls 3