PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WC9V5
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 391aa    MW: 44200.6 Da    PI: 8.1939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WC9V5genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.5e-12221266555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k++q
  Aradu.WC9V5 221 HIIAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQMQ 266
                  999***********************.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.535216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-16219278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9221266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-11221270No hitNo description
Gene3DG3DSA:4.10.280.107.8E-17221279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-14222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MLVGEDQHKK STKQQRGGGA MKVLICHERI LGRVDYLMEI SSELGIMEDP NSFLWHLSSI  60
DTCATTLAVF GDSLQKNNPL FCNSNLMNSK ISMMETTTSP TTTIIERPAK QLRSNNTSNW  120
SSHINKTPES HFVGSCSNNL LSFVDNTNHH HHQLGLVMKP KVEIMSSSSP NNIDTQGTTL  180
LGNNNNHHHN HENYLFKESS CHEAKNFGQR PKLSSHQPHD HIIAERKRRE KLSQRFIALS  240
ALVPGLKKMD KASVLGDAIK YLKQMQEKVS ALEEEQKKKK TVESVVMVKK SQLCNDDEDS  300
CSSETEPLPE IEARFCERNV LIRVHCEKKK GVIENTIIQI EKLHLKVINS SVLTFGNFAL  360
DITIIAQMDM EFSMTVKELV KNLRSAFSTF M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14213280168Transcription factor MYC2
5gnj_B2e-14213280168Transcription factor MYC2
5gnj_E2e-14213280168Transcription factor MYC2
5gnj_F2e-14213280168Transcription factor MYC2
5gnj_G2e-14213280168Transcription factor MYC2
5gnj_I2e-14213280168Transcription factor MYC2
5gnj_M2e-14213280168Transcription factor MYC2
5gnj_N2e-14213280168Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224229ERKRRE
2225230RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WC9V5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016182236.10.0transcription factor bHLH25 isoform X1
TrEMBLA0A444WXT40.0A0A444WXT4_ARAHY; Uncharacterized protein
STRINGGLYMA13G32650.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-61bHLH family protein