PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.WF2JA

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 473aa MW: 54746.4 Da PI: 9.9488

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.WF2JA	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.9	1.9e-14	11	95	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY++YAk +GFs+r+++++++ ++ei+++ +Cs+e k +++ ++ +++t+++ + a++ ++ k g w ++k++l+H+H++ Aradu.WF2JA 11 KFYRNYAKVAGFSTRVRSTNRK--ENEIKNQLITCSREEKWKSKIST---TEKTNSTAGLNYPARIYIHTLKdVGAWIISKVVLDHSHPC 95 6**************98887..7779********9999888...8889999999****998879************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-12	11	96	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.766	240	276	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.5E-4	241	273	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0016	251	278	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MTFTTLEDAG KFYRNYAKVA GFSTRVRSTN RKENEIKNQL ITCSREEKWK SKISTTEKTN 60 STAGLNYPAR IYIHTLKDVG AWIISKVVLD HSHPCYPSKA EMLKQHIELS MSIRRTIENN 120 EEAGMRSTQR SEIMHSFFNK FITRNNSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC 180 ATKSSIESQF QDVYTHQKFK EVQAQFRGKA NCITRLMNSA LGYSVYEVGE QVSSSIFNKF 240 VVTYDSVVAE VKCQCLLFES RGILCHHALS VLSFEQVSQV SPRYILERWS KKVKRRHTHI 300 KSSHDEPLME PRSKRFDQLV FRSQNICKFA YESEELSAIL HRAYDNVMVE MESLKAKRKG 360 TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLDKQ IANATKKKKT KVLSEINLFD 420 VASVLHSNSS QYQGHIMNYQ FTDFSLKASW GIDFRVYIQL YLGLKNRRLW VYI

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MTFTTLEDAG KFYRNYAKVA GFSTRVRSTN RKENEIKNQL ITCSREEKWK SKISTTEKTN  60
STAGLNYPAR IYIHTLKDVG AWIISKVVLD HSHPCYPSKA EMLKQHIELS MSIRRTIENN  120
EEAGMRSTQR SEIMHSFFNK FITRNNSLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC  180
ATKSSIESQF QDVYTHQKFK EVQAQFRGKA NCITRLMNSA LGYSVYEVGE QVSSSIFNKF  240
VVTYDSVVAE VKCQCLLFES RGILCHHALS VLSFEQVSQV SPRYILERWS KKVKRRHTHI  300
KSSHDEPLME PRSKRFDQLV FRSQNICKFA YESEELSAIL HRAYDNVMVE MESLKAKRKG  360
TSSLSHEDAN LESVNELQSP PRIRTRGRPK NRLGSKLDKQ IANATKKKKT KVLSEINLFD  420
VASVLHSNSS QYQGHIMNYQ FTDFSLKASW GIDFRVYIQL YLGLKNRRLW VYI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.WF2JA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein
TrEMBL	A0A445ET06	0.0	A0A445ET06_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	9e-27	far-red elongated hypocotyls 3