PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.WIT0W

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 346aa MW: 39512.1 Da PI: 4.8164

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.WIT0W	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182	1.5e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL++k++g+++el +vi+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat+ gyWkatgkd++v s + Aradu.WIT0W 6 LPPGFRFHPTDEELVAYYLERKITGRSIEL-DVIAEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVQS-Q 101 79**************************.9***********96435566888*********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+ykgrap+g +t+Wvmheyrl Aradu.WIT0W 102 KKAVGMKKTLVYYKGRAPHGIRTNWVMHEYRL 133 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.76E-64	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.467	6	157	IPR003441	NAC domain
Pfam	PF02365	2.7E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLERKITG RSIELDVIAE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRGGYWK ATGKDRAVQS QKKAVGMKKT LVYYKGRAPH 120 GIRTNWVMHE YRLIESLPGT PHSSFKDSFS LCRIFKKTIQ VQDKSKEEKE HQALLEEDHS 180 SGIEISREME AMNDNNNNNI TLNSNEQYPN NNNNKLPNCD ASSSDLTQGT CTPTETGIAD 240 DFHAQFACDE ANSAANSYSM GIAYPSNDIE MSMYGSMHNY QFPQTPLVME DFPQIDFAET 300 KSLKPEVTED CMFYDRYGRD CMNGTLEEII SLCSSQDNSV ALPMLE

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAPMSLPPGF RFHPTDEELV AYYLERKITG RSIELDVIAE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATRGGYWK ATGKDRAVQS QKKAVGMKKT LVYYKGRAPH  120
GIRTNWVMHE YRLIESLPGT PHSSFKDSFS LCRIFKKTIQ VQDKSKEEKE HQALLEEDHS  180
SGIEISREME AMNDNNNNNI TLNSNEQYPN NNNNKLPNCD ASSSDLTQGT CTPTETGIAD  240
DFHAQFACDE ANSAANSYSM GIAYPSNDIE MSMYGSMHNY QFPQTPLVME DFPQIDFAET  300
KSLKPEVTED CMFYDRYGRD CMNGTLEEII SLCSSQDNSV ALPMLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-59	1	162	12	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-59	1	162	12	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-59	1	162	12	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-59	1	162	12	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-59	1	162	15	173	NAC domain-containing protein 19
3swm_B	1e-59	1	162	15	173	NAC domain-containing protein 19
3swm_C	1e-59	1	162	15	173	NAC domain-containing protein 19
3swm_D	1e-59	1	162	15	173	NAC domain-containing protein 19
3swp_A	1e-59	1	162	15	173	NAC domain-containing protein 19
3swp_B	1e-59	1	162	15	173	NAC domain-containing protein 19
3swp_C	1e-59	1	162	15	173	NAC domain-containing protein 19
3swp_D	1e-59	1	162	15	173	NAC domain-containing protein 19
4dul_A	1e-59	1	162	12	170	NAC domain-containing protein 19
4dul_B	1e-59	1	162	12	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.WIT0W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015932449.1	0.0	NAC domain-containing protein 86-like
Refseq	XP_025610013.1	0.0	NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-85	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A445CEX0	0.0	A0A445CEX0_ARAHY; Uncharacterized protein
STRING	GLYMA15G41825.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10508	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	4e-95	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]