PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WL99W
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family DBB
Protein Properties Length: 231aa    MW: 25455.6 Da    PI: 7.1932
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WL99WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.56.3e-094283439
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                   C+ +++ e++lfC  ++  lC+ C l++H+       Ht+
  Aradu.WL99W 42 IQCDACDKDEASLFCPADEAALCHACDLTIHHAnklaikHTR 83
                 57******99********************744477888775 PP
2zf-B_box29.51.5e-0994131338
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 
                   ++C+ ++e ++ lfC++++  lC++C + +Hk   Ht
  Aradu.WL99W  94 TPRCDICQERRAYLFCKEDRAILCRECDVPIHKAneHT 131
                  589*****************************877865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.4E-83986IPR000315B-box-type zinc finger
PROSITE profilePS5011911.2633986IPR000315B-box-type zinc finger
PfamPF006435.4E-64283IPR000315B-box-type zinc finger
CDDcd000215.87E-64272No hitNo description
PROSITE profilePS5011910.29692139IPR000315B-box-type zinc finger
SMARTSM003368.9E-1592139IPR000315B-box-type zinc finger
PfamPF006434.7E-894131IPR000315B-box-type zinc finger
CDDcd000217.98E-995139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDPNAKSPII VLSPFPFPFI SSNTNLNCTN RQATALDREM KIQCDACDKD EASLFCPADE  60
AALCHACDLT IHHANKLAIK HTRFTLHQPS SKDTPRCDIC QERRAYLFCK EDRAILCREC  120
DVPIHKANEH TQNHSRFLLT GVKLSGSSLD TASSSSVTSS TEARSSRSRM KRPTAFNNEH  180
NMSAATTSNS DTGSASSSSI SKFLIETIPG YCFEDLLDAS FPHNNGFCKV C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171RSRMKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WL99W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015932660.11e-168B-box zinc finger protein 20 isoform X1
SwissprotQ9LQZ71e-54BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A445CFL41e-166A0A445CFL4_ARAHY; Uncharacterized protein
STRINGGLYMA04G01120.12e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-50DBB family protein
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]