PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.WMI1L

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

YABBY

Protein Properties

Length: 178aa MW: 19969.7 Da PI: 9.321

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.WMI1L	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	192.2	2.5e-59	16	155	23	170
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPe 120 vsvP +sl+++vtvrCGhC++llsvn+ + q+l+ ++ +++++++l +++ + k+ +++ ++ ++ s ++ +++ pr+pp irPPe Aradu.WMI1L 16 QVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQALPPQDP-----HHHQKQHLSFQDPSSKELGSSS--SRCNKLSAAFDPVDHDPQPRIPP-IRPPE 105 69********************************9996.....3344455555555544444433..33333333455556667788888.9 PP YABBY 121 krqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 krqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Aradu.WMI1L 106 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 155 **********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-61	16	155	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	100	148	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.4E-5	103	149	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MCGWLCMLYS KNGYWQVSVP CSSLLTIVTV RCGHCANLLS VNMGASLQAL PPQDPHHHQK 60 QHLSFQDPSS KELGSSSSRC NKLSAAFDPV DHDPQPRIPP IRPPEKRQRV PSAYNRFIKE 120 EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN KQAKLDQGEG TQKSNGFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.WMI1L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015936115.1	1e-100	putative axial regulator YABBY 2 isoform X2
Refseq	XP_025614301.1	1e-100	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	4e-66	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A445BWP2	1e-131	A0A445BWP2_ARAHY; Uncharacterized protein
STRING	GLYMA06G46560.1	3e-90	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-52	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]