PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.WNQ8E

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 319aa MW: 34986.3 Da PI: 5.2117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.WNQ8E	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.8e-06	162	210	4	55
HHHHHHHH.HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErr.RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +erE++ RR++iN ++ L+el+P + +k a +L + +++++sLq Aradu.WNQ8E 162 KRKEREKKaRREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 210 457888766******************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-12	155	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.40E-8	156	214	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-11	157	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.084	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.1E-7	164	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEQATGVLRG STHDDVVLES IQFNEEIRGI MAPAPAPENA SSFTALLELP PTQAVELLHS 60 PDCPAADREP PCHVSTNQKP YLLCSYGGNL TFPSNAALIE RAAKFSVFAG ENSPPEDAAR 120 LAPVAVSGVV KNEPQETDSN PSSTQGCVSD PAVDTKNQKT AKRKEREKKA RREKINARMK 180 LLQELVPGCN KISGTALVLD EIINHVQSLQ RQVEFLSMKL AAVNPRIDFS LDSLLATDGS 240 SVMDSNLTSM ASPVMWPENL ANGNRQHFQQ HWQFDAFHQP LWGREEANHN FMTPEHSLLS 300 YDSSANSASL QSNQLKMEL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.WNQ8E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015969486.1	0.0	LOW QUALITY PROTEIN: transcription factor bHLH48
Swissprot	Q8VZ02	5e-74	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A445CLF4	0.0	A0A445CLF4_ARAHY; Uncharacterized protein
STRING	XP_007162273.1	1e-177	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	2e-63	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]