PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WQY6T
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 910aa    MW: 100930 Da    PI: 5.6763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WQY6TgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-183884148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+e de+l +av+ + g++Wk+Ia+++   Rt+ qc +rwqk+l
      Aradu.WQY6T 38 KGNWTPEQDEILRKAVQHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84
                     79*****************************9.************986 PP
2Myb_DNA-binding63.25.2e-2090136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde ++++v+++G++ W+tIa++++ gR +kqc++rw+++l
      Aradu.WQY6T  90 KGPWSKEEDEVIIELVNKYGPKKWSTIAHHLP-GRIGKQCRERWHNHL 136
                      79******************************.*************97 PP
3Myb_DNA-binding48.91.5e-15142184145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++++k++w+
      Aradu.WQY6T 142 KEAWTQEEELTLIRAHQIYGNK-WAELTKFLP-GRTDNSIKNHWH 184
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7193384IPR017930Myb domain
SuperFamilySSF466892.23E-183698IPR009057Homeodomain-like
SMARTSM007173.9E-153786IPR001005SANT/Myb domain
PfamPF002495.3E-153884IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-214096IPR009057Homeodomain-like
CDDcd001672.94E-134084No hitNo description
PROSITE profilePS5129433.74885140IPR017930Myb domain
SuperFamilySSF466898.61E-3287183IPR009057Homeodomain-like
SMARTSM007173.7E-1989138IPR001005SANT/Myb domain
PfamPF002492.5E-1890136IPR001005SANT/Myb domain
CDDcd001675.58E-1792136No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2797144IPR009057Homeodomain-like
PROSITE profilePS5129419.641141191IPR017930Myb domain
SMARTSM007171.5E-14141189IPR001005SANT/Myb domain
PfamPF002498.7E-14142184IPR001005SANT/Myb domain
CDDcd001672.66E-11144184No hitNo description
Gene3DG3DSA:1.10.10.602.3E-21145191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    Send to blast
MNGDGKIPVA PSEEHIDGAQ KNRALHGRTT GPTRRSTKGN WTPEQDEILR KAVQHFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPDLVK GPWSKEEDEV IIELVNKYGP KKWSTIAHHL  120
PGRIGKQCRE RWHNHLNPGI NKEAWTQEEE LTLIRAHQIY GNKWAELTKF LPGRTDNSIK  180
NHWHSSVKKK LDSYLASGLL AQFQSAPLAG NPDQQMVLTS EMHSVGDGNG PKRTDREDVS  240
ECSQESADSA GLTSNLDLQT REVYKPEEES ILGKDHNLSQ ASCPQHYYIS LDDVDICIPE  300
VACQDACSSQ FAEQICSHKS GNALTGDYQF NCVDNSEMCN MVNVPFQTEG LGISTLMRPA  360
SMDPAKPNNM SISEDECCRF LFSEAVSDGC FSPRVYIKDV DMVDFSGCNM DHQIVSGGPD  420
NVISSNGTSS SPCVDNIDSE VKQEPPETPK DSSKLVPVNS FGYGSNSKVT CYAKYEKLNE  480
HSKKEDTGTL CYQPPCFPSL DIPFLSCDLA QSEPDMQQEF SPLGIRQLLM SPVSCLTPFR  540
LWDSPSGGDN LDALFKSAAK TFTGTPSILS KRHRDLLSPL SDKRTDKKLV TDMPSSLIKS  600
FSSLDFMFDD NENREADMIS PTSLQKWSIA VSVDDDKENC GQTVKDKQVE EKNNSANLDE  660
NNRENGTVEQ PSGILIERNM NDIAPNSPGL DTVLGSSART PKNLSNRRLE AVPNQRSPCS  720
RVKCVRAKEH EKLSVDVTCV GTTSGKQAKN DGGFETSSIF GDTPFMKSIK SPSAWKSPWF  780
INATFLCSPR IATEIAIEDY GYLMSSGNRS YDAIGLMKQI SEKTAATYAN AQEVLENKTP  840
KALPKNASLN DKEGGQEDND LQKQPAKHSQ MERRILDFSE CETTPSKGDN SKSSPVNFSS  900
PSSYLLKGCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-66381916159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-66381916159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WQY6T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150352e-31AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207096.10.0transcription factor MYB3R-1
TrEMBLA0A445K6J20.0A0A445K6J2_GLYSO; Transcription factor MYB3R-4 isoform A
TrEMBLI1K9970.0I1K997_SOYBN; Uncharacterized protein
STRINGGLYMA06G08660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein