PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WS3DN
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 213aa    MW: 24375.7 Da    PI: 5.3533
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WS3DNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.35.2e-22488181
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksg 81
                 +ppG+rF Pt+eel+++yL++k+eg + ++++vi+ +diy++ P++Lp+    + +  ++++w+fF++r++++a+g r++r t++g
  Aradu.WS3DN  4 MPPGYRFYPTEEELISFYLRNKLEGVREDMNRVIPVLDIYEYSPSELPQisgeA-SVrDSEQWFFFIPRQESEARGGRPKRLTTTG 88
                 79****************************99****************645542.2225669*******************88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-282111IPR003441NAC domain
PROSITE profilePS5100521.3794167IPR003441NAC domain
PfamPF023656.2E-115103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MENMPPGYRF YPTEEELISF YLRNKLEGVR EDMNRVIPVL DIYEYSPSEL PQISGEASVR  60
DSEQWFFFIP RQESEARGGR PKRLTTTGAP NGTKTDWKMN EYKAIDTHHP SSSSNNRAVP  120
MKAKCLRAFD RRPPPRRDTY PPSQNNGSSS FDHHHQHNQT VEKSSGAGSS PESSCSEDHG  180
QCSHRTEDVE NANEPFLDWE QIDWFLGSSL PEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-14310616144NO APICAL MERISTEM PROTEIN
1ut4_B2e-14310616144NO APICAL MERISTEM PROTEIN
1ut7_A2e-14310616144NO APICAL MERISTEM PROTEIN
1ut7_B2e-14310616144NO APICAL MERISTEM PROTEIN
3ulx_A2e-14310314139Stress-induced transcription factor NAC1
4dul_A2e-14310616144NAC domain-containing protein 19
4dul_B2e-14310616144NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WS3DN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025605344.11e-149NAC domain-containing protein 90
SwissprotQ9FMR34e-45NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A445CQP71e-148A0A445CQP7_ARAHY; Uncharacterized protein
STRINGGLYMA19G38211.13e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-41NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]