PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WUS96
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 494aa    MW: 51806.1 Da    PI: 8.1193
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WUS96genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-124570227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C +++rtG+C yG+rC+F+H++
  Aradu.WUS96 45 DEADCIYYLRTGFCGYGSRCRFNHPR 70
                 6799********************96 PP
2zf-CCCH40.25.6e-1393117327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++lC+++++tG Ck+G++Ck++H++
  Aradu.WUS96  93 QPLCQYYMKTGSCKFGSSCKYNHPR 117
                  79*********************96 PP
3zf-CCCH33.76.1e-11138163227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++ +tG Ck+G++CkF+H++
  Aradu.WUS96 138 GEKECSYYVKTGRCKFGGTCKFHHPQ 163
                  7899********************97 PP
4zf-CCCH34.14.5e-11313338227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG+Ck+G+ C+++H+p
  Aradu.WUS96 313 DQPECQHYLKTGECKFGPLCRYHHPP 338
                  689*********************97 PP
5zf-CCCH29.11.7e-09361384427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C ++ + G Ck+G+ C+F H++
  Aradu.WUS96 361 SPCTHYTQRGVCKFGSACRFDHPM 384
                  79********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.9E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2954371IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-94570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-64572IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-54970IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-790117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.99590118IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-1093117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-695117IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784136164IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6138164IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.957311339IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8313338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5315339IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4357384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042357385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5360385IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-7361384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4362382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MERYGRSSEG SRSDPSPEWT GTGLEEPVWQ MGLGAAEESY PQRPDEADCI YYLRTGFCGY  60
GSRCRFNHPR DRAAAVGAAA RTGGGEYPER IGQPLCQYYM KTGSCKFGSS CKYNHPRQAG  120
GSATPVSLNY YGYPLRPGEK ECSYYVKTGR CKFGGTCKFH HPQPAGIQVP ASSLVPPVSP  180
LPVPVPSPLY QSVQPPSGPS SQQIGVLVAR PPLLPGSLVH SPYGPVVLSP AMVPFSGWGP  240
YQLLTVELFV QAPAASPVLP SSTPTNVGSA QLYGITQVPS SPAAYAGPYQ PSSSSLGLSG  300
GSQKEQSLPE RPDQPECQHY LKTGECKFGP LCRYHHPPDM SAPKGNVILS PAGLPLRPGA  360
SPCTHYTQRG VCKFGSACRF DHPMGLLSYS PSTSSLADMP VAPYPVGSSV GTLALSSSTS  420
ELRPELTSGS IKESVSSRIP SSMNTLTGSV GLTLSTGEPV SQSSSQPSAQ SSSTSAAADT  480
ATTSTVSCTT SSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WUS96
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942887.10.0zinc finger CCCH domain-containing protein 58
RefseqXP_025621662.10.0zinc finger CCCH domain-containing protein 58
SwissprotQ6NPN31e-149C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A445BCI70.0A0A445BCI7_ARAHY; Uncharacterized protein
STRINGGLYMA17G02720.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-129C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]