PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.X23JQ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 237aa MW: 25240.7 Da PI: 5.7281

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.X23JQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	85.7	6.5e-27	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+ +C++ p++ p++q++++ +++k++G++ +l+ll+a +++ r+++++sl+yeA+ r+ +Pv G++g++++++++l+++++e Aradu.X23JQ 4 SCNGCRVLRKGCNLECPIKPCLnwiksPESQSNATLFLAKFYGRAGLLNLLTAGDPKIRPAIFKSLLYEACGRIVNPVFGSTGLLSTGSWHLCEAAVE 101 6************************************************************************************************9 PP DUF260 94 lallke 99 ++l ++ Aradu.X23JQ 102 AVLSGA 107 988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.727	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-22	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MRLSCNGCRV LRKGCNLECP IKPCLNWIKS PESQSNATLF LAKFYGRAGL LNLLTAGDPK 60 IRPAIFKSLL YEACGRIVNP VFGSTGLLST GSWHLCEAAV EAVLSGAPIR QQDASDGGGQ 120 LLNPSDIRHV VKRGKSCSSD HVLKPRKSQF KRRAEKSKPE PEVELDQGVA ELVVEACVVN 180 ELDDSASPDS GSGLSEHVSV VVGGGAEADS GSIESVNPAR ADDGELELEL TLGCQWL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.X23JQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015966681.1	1e-172	LOB domain-containing protein 41
TrEMBL	A0A445D2Q9	1e-169	A0A445D2Q9_ARAHY; Uncharacterized protein
STRING	GLYMA07G10180.1	6e-82	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-61	LOB domain-containing protein 41