PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X3DNX
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 209aa    MW: 23840.9 Da    PI: 7.8769
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X3DNXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1041.3e-32351272102
                   HHHHHHHHHCTG.GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeilede.elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl k+y++le++ +  +++sw+ +g+ f+v+ + ef++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weFkh++F++g +++l +i
   Aradu.X3DNX  35 FLLKTYDLLEESgNGGKIVSWNGDGSGFIVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKR---------WEFKHEKFQRGCRDMLVEI 122
                   9*********8725579*************************************************999.........******************* PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                    rkk 
   Aradu.X3DNX 123 TRKKC 127
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3429120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-4131125IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-2832125IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-113558IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-2935125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-117486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-118799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGENDSSNVL DLNLGVGNGG GQVGQSLRPR CPAPFLLKTY DLLEESGNGG KIVSWNGDGS  60
GFIVWSPAEF SELTLPRYFK HNNFSSFIRQ LNTYGFKKIS SKRWEFKHEK FQRGCRDMLV  120
EITRKKCEPS VFPSYLKSSS EENAITSNNS MEESNNNSHQ LLMEENKNLK KERLELQMQI  180
AEFKSLEMKL LECLSQVMDN HQNKSRGQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B3e-17351254104Putative transcription factor
5d5x_B3e-17351254104Putative transcription factor
5d5x_E3e-17351254104Putative transcription factor
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.X3DNX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956372.11e-154heat stress transcription factor B-2a-like
TrEMBLI3SY631e-110I3SY63_LOTJA; Uncharacterized protein
STRINGGLYMA01G34490.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-35heat shock transcription factor B2A