PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X4T4D
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 388aa    MW: 42455.4 Da    PI: 5.1981
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X4T4DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2083138156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R++ k
  Aradu.X4T4D  83 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQVK 138
                  688999**********************************************9877 PP
2START583.1e-19274386192
                  HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                  ela +a++elv +a+ +ep+W ++        + +n+de++++f+++ +     +++ea+r+++vv+m++++lve+l+d++  W++++     +a t+
  Aradu.X4T4D 274 ELAVAAMEELVGMAQMGEPLWLTMTsidggtsTVLNEDEYVRTFPRGIGpkpagFRSEASRETAVVIMNHVNLVEILMDVN-NWSTMFSgivsRAITI 370
                  57899********************9****9999************999********************************.**************** PP

                  EEECTT......EEEE CS
        START  83 evissg......galq 92 
                  ev+s+g      galq
  Aradu.X4T4D 371 EVLSTGvagnynGALQ 386
                  ******7766666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-2367138IPR009057Homeodomain-like
SuperFamilySSF466899.19E-2069140IPR009057Homeodomain-like
PROSITE profilePS5007116.81180140IPR001356Homeobox domain
SMARTSM003891.2E-1881144IPR001356Homeobox domain
CDDcd000861.78E-1883140No hitNo description
PfamPF000464.2E-1883138IPR001356Homeobox domain
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PROSITE profilePS5084817.743265388IPR002913START domain
SuperFamilySSF559611.15E-6267376No hitNo description
PfamPF018522.3E-12275385IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MFQPNMTEAV GGLHYHHQYH PFDMAQNTTT SESDVPRIRE DELFDSATKS GSENLEVEGG  60
GGSGGGGEGG SAGEDQNPRP NKKKRYHRHT QHQIQEMEAF FKECPHPDDK QRKELSRELG  120
LEPLQVKFWF QNKRTQVKTQ TERSENSQLR AENEKLRADN MRYREALSNA SCPSCGGPTA  180
IGEMSFDEHH LRLENARLRE EIDRISAIAA KYVGKPVVNY SNLSPALPPR PLELGVSGGS  240
GGFGGGSDMY SGGAGDFLRS INGPSEADKP LIIELAVAAM EELVGMAQMG EPLWLTMTSI  300
DGGTSTVLNE DEYVRTFPRG IGPKPAGFRS EASRETAVVI MNHVNLVEIL MDVNNWSTMF  360
SGIVSRAITI EVLSTGVAGN YNGALQVV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.X4T4D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953298.20.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG2
RefseqXP_025687365.10.0homeobox-leucine zipper protein HDG2
SwissprotQ93V991e-163PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A445E0W40.0A0A445E0W4_ARAHY; Uncharacterized protein
STRINGXP_007132557.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-155protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]