PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.X6G84
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 326aa    MW: 37034.8 Da    PI: 6.0757
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.X6G84genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl
      Aradu.X6G84 14 KGPWSPEEDAKLKEYIDKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.11.5e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
      Aradu.X6G84  69 GEFSEDEDRMICYLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.579966IPR017930Myb domain
SuperFamilySSF466892.34E-2711109IPR009057Homeodomain-like
SMARTSM007172.3E-121364IPR001005SANT/Myb domain
PfamPF002499.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-241569IPR009057Homeodomain-like
CDDcd001678.70E-91662No hitNo description
SMARTSM007177.9E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129415.81667117IPR017930Myb domain
PfamPF002494.6E-1069111IPR001005SANT/Myb domain
CDDcd001675.50E-870113No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYID KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEDEDRMIC YLFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMMPI  120
MMDPLTMNNN NNKPHPQITL LSILQNSSST QHSPSPPSPS PPPFISNTTA TNNNNDTYYY  180
YHPHESIISY SSSSDPIINA NSSSSTSSDS IIFQSQQQES YMDNNTIDNQ NYHQEPAEQL  240
GYCGDDYYYD YGTFVDHIVA NNNHNNYHYS GVEDAQKFMH FNGGRGNVGT EKQSSTLLEE  300
NPLDNYGIDE TKELVLSNNN FLFDHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.X6G84
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312651e-122KT031265.1 Glycine max clone HN_CCL_53 MYB/HD-like transcription factor (Glyma13g20510.1_like1) mRNA, partial cds.
GenBankKT0312661e-122KT031266.1 Glycine max clone HN_CCL_52 MYB/HD-like transcription factor (Glyma13g20510.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015951560.10.0transcription factor RAX2
RefseqXP_025635088.10.0transcription factor RAX2-like
RefseqXP_025663876.10.0transcription factor RAX2-like
TrEMBLA0A445E7C50.0A0A445E7C5_ARAHY; Uncharacterized protein
STRINGGLYMA10G06190.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36