PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.X8LDI

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 247aa MW: 27328.3 Da PI: 6.7753

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.X8LDI	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	47.7	2.6e-15	50	138	2	91
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 ++lLl+cA a++s+d +laq++++ l++ asp+gd++qRl++ f++AL +r +r +++ + + +s +n +++l+ ++ ++++ P++ Aradu.X8LDI 50 EKLLLHCASALESNDVTLAQQVMWVLNNVASPTGDTNQRLTSWFLRALISRASRICPTAL---SFKGSS-NNIQRRLMTVTElagYVDLIPWH 138 689***************************************************555544...333333.44444443333226688888886 PP
2	GRAS	48.8	1.3e-15	137	231	277	373
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +s +r+ E +g++i+n++ eg +r+er e+ ++ +r+++aG+ ++p+ +++++++k ll +++ g+ ++ e+g lvl+Wk+++ v ++aW Aradu.X8LDI 137 WHSCQRTEFESD-IGQKIENIIGYEGHHRIERLESGMQMCQRMKNAGYLSLPFCDETVMEVKGLLDEHA-SGWGMKREEGMLVLTWKGNSCVYATAW 231 567788999999.******************************************************.8899********************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.4E-13	137	231	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MHVMHSMKAE LKGASSISFQ NHSLFNTAPH SSLTGALKGC LGSLDGACIE KLLLHCASAL 60 ESNDVTLAQQ VMWVLNNVAS PTGDTNQRLT SWFLRALISR ASRICPTALS FKGSSNNIQR 120 RLMTVTELAG YVDLIPWHSC QRTEFESDIG QKIENIIGYE GHHRIERLES GMQMCQRMKN 180 AGYLSLPFCD ETVMEVKGLL DEHASGWGMK REEGMLVLTW KGNSCVYATA WVPSETRDPI 240 GFDATMA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.X8LDI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015936141.1	5e-93	scarecrow-like protein 32
Refseq	XP_025614376.1	5e-93	scarecrow-like protein 32
Refseq	XP_025614377.1	5e-93	scarecrow-like protein 32
TrEMBL	A0A445BWZ0	1e-91	A0A445BWZ0_ARAHY; Uncharacterized protein
STRING	GLYMA13G38080.2	1e-71	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49950.1	1e-28	GRAS family protein