PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XMS5F
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 136aa    MW: 15509.6 Da    PI: 7.8214
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XMS5FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.91.7e-1351127181
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                  kfY++YAk + Fs+r+++++++   +ei+++  +Cs+egk + + +    +++t+++t  +C a++ ++  k  g w +tkl
  Aradu.XMS5F  51 KFYRNYAKAACFSTRVRSTNRK--GNEIKNQLITCSREGKWKYKISP---TEKTNPTTGLNCPARIYIHTLKdVGAWIITKL 127
                  6****************98887..8889**************99877...999***************998879*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-1051127IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPESLFV VDDQFVPKVG MTFTTLEDAG KFYRNYAKAA  60
CFSTRVRSTN RKGNEIKNQL ITCSREGKWK YKISPTEKTN PTTGLNCPAR IYIHTLKDVG  120
AWIITKLGFC LPFFLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.XMS5F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-131HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020992539.11e-76protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020997160.14e-77protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020997362.14e-76protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444YPX95e-83A0A444YPX9_ARAHY; Uncharacterized protein
TrEMBLA0A444YSY61e-80A0A444YSY6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-06FAR1-related sequence 6