PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XS33A
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 437aa    MW: 50079.4 Da    PI: 7.3209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XS33AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.5e-18194240148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l ++vkq+G + W+ Ia+++  gR +kqc++rw+++l
      Aradu.XS33A 194 KGQWTPEEDRKLEKLVKQHGIRKWSQIAEKLE-GRVGKQCRERWHNHL 240
                      799*****************************.*************97 PP
2Myb_DNA-binding46.31e-14247288245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eE+ +lv+ + + G++ W+ Ia+++  gRt++++k++w+
      Aradu.XS33A 247 DGWSEEEERILVETHMKVGNR-WAEIAKRIA-GRTENSIKNHWN 288
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.905189244IPR017930Myb domain
SuperFamilySSF466895.75E-29191287IPR009057Homeodomain-like
SMARTSM007176.1E-16193242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-28195247IPR009057Homeodomain-like
PfamPF139211.1E-18197254No hitNo description
CDDcd001674.68E-15197240No hitNo description
PROSITE profilePS5129417.882245295IPR017930Myb domain
SMARTSM007173.9E-14245293IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-19248293IPR009057Homeodomain-like
CDDcd001671.05E-10249291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MKSSTPLKAL SGNSSSSSVH HDNDIIPFLH HEYGGNMMNK VTTSYSFNNP SMCRLGLPLT  60
AIDRFLCSQQ QSQVPHRKHQ QHNDDDVAKN NNVSVFDEDF HTRFSNCYYG GASNNPYYKF  120
EWPNCTTQEA SLVVDDDHDH HLLAISSDDQ EEDFNWLQKF LTLCHNKEDV QALGENLKIR  180
GRNPKKISSI SLIKGQWTPE EDRKLEKLVK QHGIRKWSQI AEKLEGRVGK QCRERWHNHL  240
RPDIKKDGWS EEEERILVET HMKVGNRWAE IAKRIAGRTE NSIKNHWNAT KRRQNSRRKN  300
KKPSSSSTTS NNNGKPQSSI LEDYIRSKTL IGTNNITAPI TTTTTNSTPT ITSESESITN  360
NSDNNNNPYY SSPTIIAESS YDDELLFMQQ LFKENNQIVN GDAVIKNLYD ECGDGFVHYS  420
NYYYPPNPGN MHNSIIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-411922942104C-Myb DNA-Binding Domain
1msf_C2e-411922942104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.XS33A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186027.10.0transcription factor MYB98-like
RefseqXP_025636325.10.0transcription factor MYB119-like
SwissprotQ9FIM49e-68MY119_ARATH; Transcription factor MYB119
TrEMBLA0A445AKV80.0A0A445AKV8_ARAHY; Uncharacterized protein
STRINGXP_004500263.11e-106(Cicer arietinum)
STRINGXP_004500264.11e-106(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-56myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]