PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XSE4D
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SRS
Protein Properties Length: 95aa    MW: 10480.8 Da    PI: 8.2245
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XSE4DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70256.61e-171447538
       DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCath 38
                 +++C dCGnqakkdC+++RCRtCCk++gf+C th
  Aradu.XSE4D 14 SSKCSDCGNQAKKDCSYTRCRTCCKNKGFHCPTH 47
                 679******************************* PP
2DUF70253.31e-164886104142
       DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhv 142
                  ++P+ +ss a+frcvrv+s+d++ +e+aYqt+v+igGh 
  Aradu.XSE4D  48 EFPASMSSVAIFRCVRVRSMDESVNEIAYQTSVNIGGHA 86 
                  79************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-131547IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.1E-181647IPR006510Zinc finger, lateral root primordium type 1
PfamPF051429.8E-124886IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.6E-144985IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MEGQEALKGT SSFSSKCSDC GNQAKKDCSY TRCRTCCKNK GFHCPTHEFP ASMSSVAIFR  60
CVRVRSMDES VNEIAYQTSV NIGGHALINH HHQPP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.XSE4D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027357012.12e-33protein SHI RELATED SEQUENCE 3-like
SwissprotQ9SJT89e-25SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLK7KHH51e-30K7KHH5_SOYBN; Uncharacterized protein
STRINGGLYMA04G01125.12e-31(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3047022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.14e-27SHI-related sequence3