PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.XUD70
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 507aa    MW: 55881.8 Da    PI: 4.59
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.XUD70genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.14.4e-1081724651312
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv++L++cA+a+++g+l la+ l+++ s las++g +m+++aa f  ALa+r+++       a+p ++ s ++ s+ l++   f+e++P+lkf+h+ta
  Aradu.XUD70 172 LVHALMACAQAIQEGKLDLADVLVNHASVLASQQGGAMRKVAANFSHALARRIYG-------AFPEESMS-SSLSDMLHV--HFYETCPYLKFAHFTA 259
                  689****************************************************.......45544444.567777777..4*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIlea++++++vH+iDf+++qGlQWpaL+qaLa Rp+gpps+R+Tg+g+ +++++++l+++g+rL+++A++++v+fef+ + +++l+dl++ +L++
  Aradu.XUD70 260 NQAILEAFSSATAVHVIDFGLKQGLQWPALMQALALRPGGPPSFRLTGIGPTSPEDTDTLQQVGWRLSQLARTIQVRFEFRGFGCNSLSDLDPTALDI 357
                  *****************************************************9******************************************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  kpgE++aVn v++lhr+l++++sle     vL++vk+++P++v+vveqea+hn++ F+erf+ea++yys+lfds+e ++    +e+ ++++++lgr+i
  Aradu.XUD70 358 KPGESVAVNAVFELHRMLAKPGSLER----VLNTVKNIEPEIVTVVEQEANHNGPVFFERFTEAMHYYSSLFDSMEGSV----NEDGTLSEVYLGRQI 447
                  **************************....************************************************6....9999*********** PP

         GRAS 295 vnvvacegaerrerhetl 312
                  +nvvaceg++r+erhetl
  Aradu.XUD70 448 CNVVACEGEDRVERHETL 465
                  ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011295.8E-626110No hitNo description
PfamPF120411.2E-112698IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098557.026146507IPR005202Transcription factor GRAS
PfamPF035141.5E-105172465IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:0090378Biological Processseed trichome elongation
GO:2000273Biological Processpositive regulation of receptor activity
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MITDDNIFAG SSSYEPFSMS GGNCMDELLA AIGYKKLRSK DNMADVGQKL DQQLEAVMMD  60
NNVNAREDGT SSNVASDDAV VHYDDPNDVF PWEKTMLTPT TTHNNNQNDT TISNSLPFTQ  120
ILEDPLRFNI LNGNSAKDND LTAVTETVKS QVEQHSDLTC LCVAVEDTGV RLVHALMACA  180
QAIQEGKLDL ADVLVNHASV LASQQGGAMR KVAANFSHAL ARRIYGAFPE ESMSSSLSDM  240
LHVHFYETCP YLKFAHFTAN QAILEAFSSA TAVHVIDFGL KQGLQWPALM QALALRPGGP  300
PSFRLTGIGP TSPEDTDTLQ QVGWRLSQLA RTIQVRFEFR GFGCNSLSDL DPTALDIKPG  360
ESVAVNAVFE LHRMLAKPGS LERVLNTVKN IEPEIVTVVE QEANHNGPVF FERFTEAMHY  420
YSSLFDSMEG SVNEDGTLSE VYLGRQICNV VACEGEDRVE RHETLXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXGWRRTTG VSCSVGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-5117945826311Protein SCARECROW
5b3h_A8e-5117945825310Protein SCARECROW
5b3h_D8e-5117945825310Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.XUD70
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025609386.10.0DELLA protein GAI
SwissprotQ84TQ71e-164GAI_GOSHI; DELLA protein GAI
TrEMBLA0A445C6470.0A0A445C647_ARAHY; Uncharacterized protein
STRINGXP_004503135.11e-178(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-151RGA-like 1