PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.XW987

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB

Protein Properties

Length: 319aa MW: 36178.8 Da PI: 8.2263

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.XW987	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.5e-13	20	65	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ v ++G+++W++I ++ ++Rt+k+c++rw + Aradu.XW987 20 KGPWKKEEDEVLLNHVSKYGPRDWSSIRSKGLLHRTGKSCRLRWVN 65 79***********************888779*********87 PP
2	Myb_DNA-binding	42.6	1.4e-13	76	115	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++T+eE+ +++ +q+G++ W++Ia+++ gRt++++k++w Aradu.XW987 76 KFTAEEERVVIELQAQFGNK-WAKIASYLS-GRTDNDVKNFW 115 79****************.*****.********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.811	15	71	IPR017930	Myb domain
SuperFamily	SSF46689	2.55E-28	18	115	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-20	18	68	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-12	19	69	IPR001005	SANT/Myb domain
CDD	cd00167	5.29E-12	22	67	No hit	No description
Pfam	PF13921	5.0E-12	23	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.5E-18	69	121	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.953	72	123	IPR017930	Myb domain
SMART	SM00717	3.0E-12	73	121	IPR001005	SANT/Myb domain
CDD	cd00167	2.15E-10	76	115	No hit	No description
Pfam	PF00249	1.3E-11	76	115	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MHGNKRKKER GDELVDYIRK GPWKKEEDEV LLNHVSKYGP RDWSSIRSKG LLHRTGKSCR 60 LRWVNKLRPN LKNGCKFTAE EERVVIELQA QFGNKWAKIA SYLSGRTDND VKNFWSSRQK 120 RLARILQAST STSKSHRNKP KLHHHLPTFQ APKLSSSSEG ESSSKPHQPC LFSCNDNSEV 180 IKMVALPDLI KPKLPNSEQE ESALFESNKS SSMMEQIPFP QIPDELQTDL TPFSLGDQDF 240 LTRIDDPNFA DYFGPLGAYE LGLAPQHTIG FPFFDPSEGS CRIGSTDIIG SSKNYDSIFD 300 DLPVNMFDHM DPPSIPSKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-27	18	121	25	126	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269\|PubMed:15618418, ECO:0000269\|PubMed:15694308, ECO:0000269\|PubMed:19300502, ECO:0000269\|PubMed:21285328, ECO:0000269\|PubMed:24876252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.XW987

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269\|PubMed:21441434, ECO:0000269\|PubMed:25057814}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	1e-51	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025627974.2	0.0	transcription factor DUO1-like
Swissprot	A0A178VEK7	3e-78	DUO1_ARATH; Transcription factor DUO1
TrEMBL	A0A445EH77	0.0	A0A445EH77_ARAHY; Uncharacterized protein
STRING	XP_007134506.1	1e-131	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3693	31	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	6e-78	MYB family protein

Publications ? help Back to Top
Zheng B,He H,Zheng Y,Wu W,McCormick S An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana. PLoS Genet., 2014. 10(7): p. e1004421 [PMID:25057814] Peters B, et al. A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter. Plant Physiol., 2017. 173(1): p. 280-293 [PMID:27624837] Zheng Z, et al. Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy. Plant Physiol., 2017. 174(3): p. 1764-1778 [PMID:28515145]