PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Y0UPL

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WRKY

Protein Properties

Length: 124aa MW: 14808.8 Da PI: 8.0744

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Y0UPL	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.7	5e-33	45	103	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Aradu.Y0UPL 45 LDDGYRWRKYGQKSVKNSMYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 103 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-31	35	103	IPR003657	WRKY domain
SuperFamily	SSF118290	5.1E-29	40	104	IPR003657	WRKY domain
PROSITE profile	PS50811	28.483	40	105	IPR003657	WRKY domain
SMART	SM00774	1.7E-38	45	104	IPR003657	WRKY domain
Pfam	PF03106	2.2E-26	46	103	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MMMMQNPLVQ ENIDWVSFFS NEQNNNLFIG DNHNTNKETM EYDILDDGYR WRKYGQKSVK 60 NSMYPRSYYR CTHHTCNVKK QVQRLSKDTS IVVTTYEGIH NHPCEKLMET LTPLLKQMQF 120 LASF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-26	39	102	11	74	Probable WRKY transcription factor 4
2lex_A	4e-26	39	102	11	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Y0UPL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015947794.2	1e-63	probable WRKY transcription factor 24
Swissprot	Q8GY11	2e-50	WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBL	A0A445EIJ7	3e-55	A0A445EIJ7_ARAHY; Uncharacterized protein
STRING	GLYMA16G03480.2	7e-56	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	9e-53	WRKY DNA-binding protein 43

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]