PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Y1RGP
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 453aa    MW: 50091.9 Da    PI: 9.4748
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Y1RGPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-054767323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C+ Cgk F r  nL+ H r H
  Aradu.Y1RGP 47 CETCGKGFQRDQNLQLHRRGH 67
                 *******************88 PP
2zf-C2H212.90.00033121143123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  Aradu.Y1RGP 121 WKCDKCSKRYAVQSDWKAHSKTC 143
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.92E-74467No hitNo description
Gene3DG3DSA:3.30.160.608.9E-54567IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5934567IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-4109142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.92E-7116141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MMILQNMDHG ELSNAFPHHQ NQNPTTTPPP SLKRKRNLPG NPGMFLCETC GKGFQRDQNL  60
QLHRRGHNLP WKLKQRTNKE PKKRVYVCPE KTCVHNHPSR ALGDLTGIKK HFCRKHGEKK  120
WKCDKCSKRY AVQSDWKAHS KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALAEETARVN  180
AASSINNSTL GANNNNNNII GYNNMMIGTS MAPHNNNNNN NMATQFASIC NKPIPFTEEA  240
TNNQTTTRGL SLWMDHHHHH RQEATMATNN NNYHLNWVFG SKISTNPSQD LSSNNTITST  300
TTTSLPILGS IVNVPSLYSS QHQPHQTCAS SSSANMSATA LLQKAAQVGA TSSDPSSFLG  360
ALGLKCSNGS DQGQDGNNNK FCGVYGSSLV LTSSSNNINR EAEKNELSQM HPSKRRHVMP  420
NEESGGGQTR DFLGVGGANH HLPPFINQSL DLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-36117186372Zinc finger protein JACKDAW
5b3h_F7e-36117186372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Y1RGP
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206032e-32AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
GenBankAK1207232e-32AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence.
GenBankAL6629542e-32AL662954.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence.
GenBankAP0041882e-32AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11.
GenBankAP0149582e-32AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAP0149602e-32AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-32CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025687724.10.0zinc finger protein MAGPIE
SwissprotQ9ZWA61e-122IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A445DZQ20.0A0A445DZQ2_ARAHY; Uncharacterized protein
STRINGGLYMA12G13810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-109C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]