PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Y3PUS

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 202aa MW: 23497.7 Da PI: 8.6215

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Y3PUS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.4	3.7e-16	52	137	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +f+ +Y+ ++ F vrk++s+k+ ng+i + +f C keg r+++k++ + + r etrt+C+ kl ++ k +k+e+++++ HnH+l Aradu.Y3PUS 52 QFWIDYGGRMEFGVRKQYSNKN-ANGKILSLRFICVKEGVRKSDKRD-SLTVILRLETRTNCDVKLGIRYIKgIEKYEIHDFS--HNHPL 137 699***************99.8888*************999.99999**************999****996..88887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-11	52	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MSCDANRRGR REDHFGEIGD VQRFLNAQNM DIEFDWLPKL GKTFNIVGEA WQFWIDYGGR 60 MEFGVRKQYS NKNANGKILS LRFICVKEGV RKSDKRDSLT VILRLETRTN CDVKLGIRYI 120 KGIEKYEIHD FSHNHPLHLP QTTHMLACQQ KISQVQAQEI EMADDSGITE RASFELMSRQ 180 VGGRENIGYT RLDQKNIFVP KE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Y3PUS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986514.1	1e-103	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025616747.1	1e-102	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2K3PRH2	8e-69	A0A2K3PRH2_TRIPR; Protein FAR1-related sequence 5-like
STRING	XP_004506622.1	9e-51	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-09	FAR1-related sequence 5