PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Y4VR1

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 443aa MW: 51060.7 Da PI: 7.7326

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Y4VR1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.6	3.5e-17	47	133	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t++++ +C ++ ++ k g w ++k++l+H+H+++p Aradu.Y4VR1 47 KFYRNYAKVAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKTKISL---TEKTNPTSGLNCPTRIYIHTLKdVGAWIISKVVLDHSHPCCP 133 6**************98887..8889**********99887...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-14	47	133	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.827	300	336	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0016	311	338	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MSDSQLNQGE VDYEFESNEV PESLSVVDDQ FIPKVGMTFT TLEDAGKFYR NYAKVAGFST 60 RVRSTNRKGN EIKNQLITCS REGKWKTKIS LTEKTNPTSG LNCPTRIYIH TLKDVGAWII 120 SKVVLDHSHP CCPSKAEMLK QHRELSMSIR RTIENNEEAG IRPNLYEDRH IWVPIYLNHH 180 FWAGMRSTQR SESMHSFFNK FITWNSSLIQ FVKQYDNCLE SREQAERESD AADFHTVIPC 240 ATKSSIEAQF QDVYTHQKFM EVQAQFRGKA NCITRLTNSA LGYSVYEVEE QVSSSIFNKF 300 VVTYNSVAAE VKCQCLLFES RGILCHHALS VLSFEQVSQV SLRYILERWS KKVKRRHTHI 360 KSSHDEPLME PRSKRFDQLV FCSQNICEFA SESEELTAFL HRAYDNVMAE MESLKAKRKG 420 TSSLSHEDAN LESVNKLQSP PRI

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MSDSQLNQGE VDYEFESNEV PESLSVVDDQ FIPKVGMTFT TLEDAGKFYR NYAKVAGFST  60
RVRSTNRKGN EIKNQLITCS REGKWKTKIS LTEKTNPTSG LNCPTRIYIH TLKDVGAWII  120
SKVVLDHSHP CCPSKAEMLK QHRELSMSIR RTIENNEEAG IRPNLYEDRH IWVPIYLNHH  180
FWAGMRSTQR SESMHSFFNK FITWNSSLIQ FVKQYDNCLE SREQAERESD AADFHTVIPC  240
ATKSSIEAQF QDVYTHQKFM EVQAQFRGKA NCITRLTNSA LGYSVYEVEE QVSSSIFNKF  300
VVTYNSVAAE VKCQCLLFES RGILCHHALS VLSFEQVSQV SLRYILERWS KKVKRRHTHI  360
KSSHDEPLME PRSKRFDQLV FCSQNICEFA SESEELTAFL HRAYDNVMAE MESLKAKRKG  420
TSSLSHEDAN LESVNKLQSP PRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Y4VR1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A1M9	0.0	A0A445A1M9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-31	far-red elongated hypocotyls 3