PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Y5WGV

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 620aa MW: 69305.2 Da PI: 5.1935

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Y5WGV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	453.8	1.1e-138	250	620	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++ Ll+cA a+s+g++e+a+++++ l++ +s +g+p qR+aay++e+Laarla+s++ +ykal+++e++ ss++laa+++++ev+P++kf++++aN Aradu.Y5WGV 250 RQMLLDCAVALSEGNQEAASSMINDLRQKVSIQGEPSQRIAAYMVEGLAARLAESGKCIYKALKCKEAP---SSDRLAAMQILFEVCPCFKFGFVAAN 344 689***************************************************************9...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 +aI eav+ +++vHiiDfdi+qG Q+++L+q LasR+++p ++R+Tgv++pes+ s l+ +g+rL+k+Ae+lg+pfef++ v +r++ +++++L+ Aradu.Y5WGV 345 NAITEAVKDARKVHIIDFDINQGSQYINLIQILASRSRKPVHVRLTGVDDPESVqrSVGGLQIIGQRLEKLAEALGLPFEFQA-VPSRTSLVTPSMLN 441 ************************************************9999999********************.7********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++pgEal+Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+++lpr+s++r++vEr++l+r+ Aradu.Y5WGV 442 CRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTTPFLPRFVEAYNYYSAVFESLDVTLPRDSQDRMNVERQCLARD 539 ********************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ivn+vaceg++r+er e ++kWr+r+++aGF++ p+s+++ ++++ + ++++ d y+v+ee+g+l +gW+d++L+++SaWr Aradu.Y5WGV 540 IVNIVACEGEDRIERYEVAGKWRARMTMAGFTSTPMSKNVSDEIRKMNKMHYYDKYNVKEEKGALHFGWEDKNLIVASAWR 620 ************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.479	223	600	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-136	250	620	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MRIINPADPK KLSDTKATKF TRYSNPSKFN KITSFQGEGT MSLVRSAELA PTPYKSAKLY 60 SLKETDVRPG LSSQIFDADK HRNMHMTDTY SSESYEKYFH ESPSEELIEP CSSGIYSPIH 120 IDGASSYQFR SSSGASLVAN NTFGTSFVPE LGSGFSEIGN LDDQGLMRSR LKALERRLLG 180 QSDGEEEEEE EDMFGTSQNM EIEQDISEWA DSIQNMLLQD SPKETSSSDS SLSSSISSNK 240 EMSAIPQTPR QMLLDCAVAL SEGNQEAASS MINDLRQKVS IQGEPSQRIA AYMVEGLAAR 300 LAESGKCIYK ALKCKEAPSS DRLAAMQILF EVCPCFKFGF VAANNAITEA VKDARKVHII 360 DFDINQGSQY INLIQILASR SRKPVHVRLT GVDDPESVQR SVGGLQIIGQ RLEKLAEALG 420 LPFEFQAVPS RTSLVTPSML NCRPGEALVV NFAFQLHHMP DESVSTVNER DQLLRLVKSL 480 NPKLVTVVEQ DVNTNTTPFL PRFVEAYNYY SAVFESLDVT LPRDSQDRMN VERQCLARDI 540 VNIVACEGED RIERYEVAGK WRARMTMAGF TSTPMSKNVS DEIRKMNKMH YYDKYNVKEE 600 KGALHFGWED KNLIVASAWR

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MRIINPADPK KLSDTKATKF TRYSNPSKFN KITSFQGEGT MSLVRSAELA PTPYKSAKLY  60
SLKETDVRPG LSSQIFDADK HRNMHMTDTY SSESYEKYFH ESPSEELIEP CSSGIYSPIH  120
IDGASSYQFR SSSGASLVAN NTFGTSFVPE LGSGFSEIGN LDDQGLMRSR LKALERRLLG  180
QSDGEEEEEE EDMFGTSQNM EIEQDISEWA DSIQNMLLQD SPKETSSSDS SLSSSISSNK  240
EMSAIPQTPR QMLLDCAVAL SEGNQEAASS MINDLRQKVS IQGEPSQRIA AYMVEGLAAR  300
LAESGKCIYK ALKCKEAPSS DRLAAMQILF EVCPCFKFGF VAANNAITEA VKDARKVHII  360
DFDINQGSQY INLIQILASR SRKPVHVRLT GVDDPESVQR SVGGLQIIGQ RLEKLAEALG  420
LPFEFQAVPS RTSLVTPSML NCRPGEALVV NFAFQLHHMP DESVSTVNER DQLLRLVKSL  480
NPKLVTVVEQ DVNTNTTPFL PRFVEAYNYY SAVFESLDVT LPRDSQDRMN VERQCLARDI  540
VNIVACEGED RIERYEVAGK WRARMTMAGF TSTPMSKNVS DEIRKMNKMH YYDKYNVKEE  600
KGALHFGWED KNLIVASAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-68	256	619	26	378	Protein SCARECROW
5b3h_A	4e-68	256	619	25	377	Protein SCARECROW
5b3h_D	4e-68	256	619	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Y5WGV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015934438.1	0.0	scarecrow-like protein 1
Refseq	XP_015934439.1	0.0	scarecrow-like protein 1
Refseq	XP_020984368.1	0.0	scarecrow-like protein 1
Refseq	XP_025612840.1	0.0	scarecrow-like protein 1
Refseq	XP_025612841.1	0.0	scarecrow-like protein 1
Refseq	XP_029144126.1	0.0	scarecrow-like protein 1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A445BSP5	0.0	A0A445BSP5_ARAHY; Uncharacterized protein
STRING	GLYMA06G12701.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4988	34	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]