PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Y65RC
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 169aa    MW: 19962.3 Da    PI: 6.0264
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Y65RCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.2e-1521110196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvkv 96 
                  ffkv +++    ++ + lpkkf++++g++   s  l l+ ++g +W+v      ++g++++++GWkeFv    L++g ++ F+++ g  + +  v++
  Aradu.Y65RC  21 FFKVILRKTLQDEN-FKLPKKFTRKYGSD--LSNPLYLKPPDGTEWRVDW--IIHDGGILFKEGWKEFVAYYSLDDGHVLWFEYNiG--TSRIEVQI 110
                  67777666666555.***********988..6777***************..99999**************************9734..33345655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.8E-1915114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-1916114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-1320112No hitNo description
PROSITE profilePS5086312.05520114IPR003340B3 DNA binding domain
PfamPF023625.5E-1221110IPR003340B3 DNA binding domain
SMARTSM010193.0E-1121114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MTSSNYQQNE HSPSNSSVIR FFKVILRKTL QDENFKLPKK FTRKYGSDLS NPLYLKPPDG  60
TEWRVDWIIH DGGILFKEGW KEFVAYYSLD DGHVLWFEYN IGTSRIEVQI SDMSGLQIEY  120
PVNDQIKEHP PQHRGEPVER PKEQQTRDVD SSPNTQNMRF NEVRQEKIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Y65RC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020988908.11e-124B3 domain-containing protein At3g18960-like
TrEMBLA0A445B1P11e-110A0A445B1P1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-18B3 family protein