PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Y7XZN
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 208aa    MW: 23606.7 Da    PI: 8.7993
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Y7XZNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.7e-15952144
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 k i n+s+r  t  kR+ g++KK  E+S+LC+++++ ii+ss++
  Aradu.Y7XZN  9 KYIANDSKRRATQKKRKSGLIKKVDEISTLCGVDACAIIYSSDD 52
                 5699*************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.269150IPR002100Transcription factor, MADS-box
CDDcd002667.82E-32285No hitNo description
SuperFamilySSF554554.45E-25395IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-10323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MARKKVELKY IANDSKRRAT QKKRKSGLIK KVDEISTLCG VDACAIIYSS DDPQPEVWPS  60
PSGVNRVISR FKEMPELEQN KKMMSQESFL RQRIQKGQDQ LKKLKNENRK KEMNNLMFQS  120
LGGYQSLDNA TMIDLNDLAW IIDQNINEVN KQMSKLQGQE GTSSNNNGVA TINEEQAQVD  180
NIINGGVFPF VDAANNFQND YCPTPFNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVELKYIANDSKRRATQKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Y7XZN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015949921.11e-153agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-49AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A445EVJ51e-130A0A445EVJ5_ARAHY; Uncharacterized protein
STRINGXP_004500454.18e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-44AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]