PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.YAX06

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 466aa MW: 51541.3 Da PI: 7.0317

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.YAX06	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	307	342	14	54
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+N+++++L+el+P++ K +Ka++L A++Y+k L Aradu.YAX06 307 ERVNKRIHTLKELIPNC-----NKIDKASTLDDAIDYLKTL 342 589***********8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.659	293	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-12	298	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.38E-9	301	347	No hit	No description
SMART	SM00353	4.1E-10	304	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-7	307	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-9	308	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MFNSSRKGMT RSSSLLHVNK DIGELVWENG EVKVQGRGAA VEERAAKLDR FYCSSILDQS 60 KKQIQQGCSN FKLISNTYSS SLSEQCKKPR IIDFSGSAQA KTKSHTLQHL GTCNNNNNNN 120 NNNNNQRTSL GGGMVNFPNF LVPSLFLNKS SSSAAAATSS KGHDHSSVVI DSSNNNKAAT 180 QELKETPFHQ VQPLDQHSHG QKLYHGASSS SASPPPPNNN IEQHLVVASS PVSSIGASND 240 PDIGIMRKQH EEYSNITDHD HDHDDTTTYI SDDDDEETED VIIAKETPAA GTRAKRSRDP 300 EVHNLSERVN KRIHTLKELI PNCNKIDKAS TLDDAIDYLK TLKLQLQIMS MGRGLCMPLM 360 MLHNHHNQLM CYRPSSGTGI PHQNMFDGFF NQMRPMIIPP SPPFINPTPP LAPLSIANSS 420 SRDVSHVQAI NNGDQVSLHQ HTTSSSYPFY FPTIINQEEK NNYGME

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MFNSSRKGMT RSSSLLHVNK DIGELVWENG EVKVQGRGAA VEERAAKLDR FYCSSILDQS  60
KKQIQQGCSN FKLISNTYSS SLSEQCKKPR IIDFSGSAQA KTKSHTLQHL GTCNNNNNNN  120
NNNNNQRTSL GGGMVNFPNF LVPSLFLNKS SSSAAAATSS KGHDHSSVVI DSSNNNKAAT  180
QELKETPFHQ VQPLDQHSHG QKLYHGASSS SASPPPPNNN IEQHLVVASS PVSSIGASND  240
PDIGIMRKQH EEYSNITDHD HDHDDTTTYI SDDDDEETED VIIAKETPAA GTRAKRSRDP  300
EVHNLSERVN KRIHTLKELI PNCNKIDKAS TLDDAIDYLK TLKLQLQIMS MGRGLCMPLM  360
MLHNHHNQLM CYRPSSGTGI PHQNMFDGFF NQMRPMIIPP SPPFINPTPP LAPLSIANSS  420
SRDVSHVQAI NNGDQVSLHQ HTTSSSYPFY FPTIINQEEK NNYGME

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.YAX06

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015968803.1	0.0	transcription factor APG isoform X1
TrEMBL	A0A444YJA1	0.0	A0A444YJA1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13329	18	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-21	phytochrome interacting factor 3