PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YE2F8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 337aa    MW: 36910.7 Da    PI: 9.2828
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YE2F8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.72.9e-31163219158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++I++RRq+Rak+  ++kl +k rkpy+heSRh hA+rRpRg+gGrF
  Aradu.YE2F8 163 DGPIYVNAKQYHGIIRRRQSRAKAVLDNKL-TKRRKPYMHESRHLHAMRRPRGCGGRF 219
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-35161222IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.492162222IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.6E-27165219IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-23165187IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-23196219IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
YKSSFGSIRT VYMAKQSVYP NKEHEGIAHN SSGPWWSLFG SQYGESCGQM KPFSLEIPNY  60
VDQIDTGKQS ARGAENISGK GHTTQFTIFP DDCKMPCGAQ KPQAAISLQS PLADTNTRFE  120
LGFNQPMICA KYPYMDQIYG LFSPYGPQIS GRIMLPLSMT SDDGPIYVNA KQYHGIIRRR  180
QSRAKAVLDN KLTKRRKPYM HESRHLHAMR RPRGCGGRFL NTKNSDDQND KSGNKVIKAL  240
GEQLQSCGSQ SSEVLQSEVG TLNSSKETNG SSPNISGSEV TSMYSRGGLD SFAISHLGSA  300
VTVHSLVDMI DGGRGMNMIM PPKWVAAVGG NCCNLNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18165226465NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177196RRRQSRAKAVLDNKLTKRRK
2177197RRRQSRAKAVLDNKLTKRRKP
3178197RRQSRAKAVLDNKLTKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YE2F8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946278.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A444X8Y50.0A0A444X8Y5_ARAHY; Uncharacterized protein
STRINGXP_007162983.11e-172(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-64nuclear factor Y, subunit A10