PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YJ7IT
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 272aa    MW: 31223.2 Da    PI: 8.4623
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YJ7ITgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.35.1e-0851100153
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr 53 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ + tek+ +
  Aradu.YJ7IT  51 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISPTEKT-N 100
                  6***************998776..8889************99988773332.2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-551100IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.149220256IPR007527Zinc finger, SWIM-type
PfamPF044348.1E-5228253IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4231258IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDHSNEDCQL NPGEVDYEFE SNEVPEPLSV VDDELVPKVR MTFRTLEDVG KFYRNYAKAA  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGMRSTQR SESMHSFFNK  120
YITRNSLLIQ FVKQYDNCLG SREQAERESD AADFHTVIPC ATKSSIETQF QDVYTQAKFR  180
EVQAQFRGKA NCITRLKNSA LDYSVYEVVE QVSSSIFNKF AVTYDSVAAK VKCQCLLFES  240
RGILCRHALS VLSFEQVSQV SPRYILERWS KK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YJ7IT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981527.11e-112protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A4U91e-149A0A445A4U9_ARAHY; Uncharacterized protein
TrEMBLA0A445DYG01e-149A0A445DYG0_ARAHY; Uncharacterized protein
STRINGXP_004490233.12e-42(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-25far-red elongated hypocotyls 3