PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YVE0A
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 426aa    MW: 48108.4 Da    PI: 6.6772
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YVE0AgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.2e-10105140137
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++
      Aradu.YVE0A 105 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSG 140
                      899*****************************.**96 PP
2Myb_DNA-binding55.61.3e-17168211146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
      Aradu.YVE0A 168 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 211
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.659100151IPR017930Myb domain
SMARTSM007170.0035104149IPR001005SANT/Myb domain
PfamPF002497.1E-9105140IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-19105209IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-12106168IPR009057Homeodomain-like
CDDcd001677.94E-8108140No hitNo description
PROSITE profilePS5129426.472163217IPR017930Myb domain
SMARTSM007175.5E-14167215IPR001005SANT/Myb domain
PfamPF002492.5E-14168210IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-19169216IPR009057Homeodomain-like
CDDcd001679.52E-12170210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MNSCPSSFIY SSSSQQNTSN SMGMVYEDMA SLSLCSNYTL TPSAASWGFP YEEHPTHNSD  60
LAEGTTKGSD SSEDNGVIGE NNNNNNNPNN KEGESSSGQS KLCARGHWRP AEDSKLKELV  120
ALYGPQNWNL IAEKLEGRSG IYIYVYVSID IYVTYYNIIE DLDPRITRRA FSEEEEERLM  180
QAHRIYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ SSAYRRRRLT QSNNFYRRID  240
HNNNNNNNNN NVSSESSPPP HCFVAGFSSL PFHGGVLDFG ANNKPYAAVA SSSSSTFNFF  300
SGGRGNNNSR EMVGGEYYYG SNHHHHYNQQ QAHNNNHAYY TRYPNHQYMM MMMPSVQQHQ  360
NNNHNKNFYS FSSNSSTTVA QVLGSDPSLS SMAEQQHRDH EEASDPPTTI PEPPLFIDFL  420
GVGATT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-231052167107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228YRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YVE0A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956860.10.0transcription factor MYB117
TrEMBLA0A444ZUM30.0A0A444ZUM3_ARAHY; Uncharacterized protein
STRINGGLYMA07G35581.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.15e-62myb domain protein 117