PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YX0HY
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 139aa    MW: 16715.1 Da    PI: 9.6705
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YX0HYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox322e-10651002055
                  HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Aradu.YX0HY  65 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 100
                  5679*****************************985 PP
2ELK39.71e-132041122
          ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                 ELK++LlrKYsgyL+sLkqE+s
  Aradu.YX0HY 20 ELKNHLLRKYSGYLSSLKQELS 41
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011883.5E-72041IPR005539ELK domain
PfamPF037896.9E-112041IPR005539ELK domain
PROSITE profilePS5121311.2962040IPR005539ELK domain
PROSITE profilePS5007112.98940103IPR001356Homeobox domain
SuperFamilySSF466892.69E-2041115IPR009057Homeodomain-like
SMARTSM003892.1E-1342107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-2845106IPR009057Homeodomain-like
CDDcd000869.71E-1252104No hitNo description
PfamPF059202.2E-176099IPR008422Homeobox KN domain
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MWVEGDTEVA EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL SKKKKKGKLP KDARQKLLNW  60
WELHYKWPYP SESEKVALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHAHQK  120
QTLYMDPHYL PDPHYRLAP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YX0HY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1070022e-94HM107002.1 Glycine max KNOX-like DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972542.14e-96homeotic protein knotted-1
RefseqXP_025606784.15e-96homeotic protein knotted-1
SwissprotO041354e-75KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A444YVW81e-94A0A444YVW8_ARAHY; Uncharacterized protein
STRINGXP_004291007.11e-74(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-65KNOTTED-like from Arabidopsis thaliana