PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Z3NVH

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 894aa MW: 98939.4 Da PI: 4.4545

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Z3NVH	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	20	42	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H Aradu.Z3NVH 20 HVCNKCGWPFPNPHPSAKHRRAH 42 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	22	42	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
MDSEDQRITQ TQGNENHGVH VCNKCGWPFP NPHPSAKHRR AHKKNCGTIE GYKLLVSEGQ 60 THLNPSDDEH FSDNDHKTQD NGGLRGKPIR SRDEQFLDAF DKWDSLDLAT DRKHLDFSVS 120 SKDNGSYAAE ESPSISKSRN DIVAQTPKIL QSERNDDCNL LELQDFKTDD SFALTSDSNT 180 CRSEAMSDVL LDNKIYVDGT KGTTLKEKDE IKPDRDTFEI VESSDSTIGR TFEGVSGAVT 240 EVVSLKSQVT DGAFILKENN GSGFPSVMPK EDLFLEAESA QSMNDSIDGI RVESEHMTEL 300 ATSGDIMISR EREEVNVDML TFPSCDDRPD VAHPHIEYEC HEPVVSQNSA SLHLSKALEQ 360 GHDGLKDSVT KENDFLINQG QLSKKGDRLS QDMHSLNSNM KKQVNCELMA AEMHAEECIE 420 VFNGESNRRL HETGAFMNDM KTEKNENHVV HFSEEQVSND GHKNSQQIDV PKGSLMAASD 480 ENACDASFVS ATSQTTAVII RDNTTHHEGN ITSIAVDDEC RRANIENDTG ICMNTLQSSN 540 VLSEINSSSI CGVEMGKFEQ SDIIDAQHAE SGIVKDATLP DTFESTILSE VVIDGPKGTP 600 EDIECSNRSP LSCTHEKIKE EEINSIDRSN EYSNIVASTS AAPHQTQDEE LLLKATEGID 660 LIEDSNRTGR DHSLNIEPYQ CVSPVEDTQD GQHGTKVPGV VAVPIQDRRD LPVQSDVQAT 720 NEAEAIASTD LSMSTETEKS NLKYPEASEE QQYEKSEMFE PPSFMTLVEP GLMLGPKSAP 780 EVETDPNKQK PDSNSSQAAW FPTLTHNAND KKSKSPKSEK DSVNQKHVRV TEDNGSGLTT 840 VNSILGCESP AMQIMNREST EEWNSSDDIT RKKKKDKSRS HWIQLLCCSS VETR

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

MDSEDQRITQ TQGNENHGVH VCNKCGWPFP NPHPSAKHRR AHKKNCGTIE GYKLLVSEGQ  60
THLNPSDDEH FSDNDHKTQD NGGLRGKPIR SRDEQFLDAF DKWDSLDLAT DRKHLDFSVS  120
SKDNGSYAAE ESPSISKSRN DIVAQTPKIL QSERNDDCNL LELQDFKTDD SFALTSDSNT  180
CRSEAMSDVL LDNKIYVDGT KGTTLKEKDE IKPDRDTFEI VESSDSTIGR TFEGVSGAVT  240
EVVSLKSQVT DGAFILKENN GSGFPSVMPK EDLFLEAESA QSMNDSIDGI RVESEHMTEL  300
ATSGDIMISR EREEVNVDML TFPSCDDRPD VAHPHIEYEC HEPVVSQNSA SLHLSKALEQ  360
GHDGLKDSVT KENDFLINQG QLSKKGDRLS QDMHSLNSNM KKQVNCELMA AEMHAEECIE  420
VFNGESNRRL HETGAFMNDM KTEKNENHVV HFSEEQVSND GHKNSQQIDV PKGSLMAASD  480
ENACDASFVS ATSQTTAVII RDNTTHHEGN ITSIAVDDEC RRANIENDTG ICMNTLQSSN  540
VLSEINSSSI CGVEMGKFEQ SDIIDAQHAE SGIVKDATLP DTFESTILSE VVIDGPKGTP  600
EDIECSNRSP LSCTHEKIKE EEINSIDRSN EYSNIVASTS AAPHQTQDEE LLLKATEGID  660
LIEDSNRTGR DHSLNIEPYQ CVSPVEDTQD GQHGTKVPGV VAVPIQDRRD LPVQSDVQAT  720
NEAEAIASTD LSMSTETEKS NLKYPEASEE QQYEKSEMFE PPSFMTLVEP GLMLGPKSAP  780
EVETDPNKQK PDSNSSQAAW FPTLTHNAND KKSKSPKSEK DSVNQKHVRV TEDNGSGLTT  840
VNSILGCESP AMQIMNREST EEWNSSDDIT RKKKKDKSRS HWIQLLCCSS VETR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	870	875	RKKKKD
2	870	876	RKKKKDK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Z3NVH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015958347.1	0.0	uncharacterized protein LOC107482397 isoform X1
TrEMBL	A0A444ZBP2	0.0	A0A444ZBP2_ARAHY; Uncharacterized protein
STRING	GLYMA08G11280.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19