PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Z40HV

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 339aa MW: 37484.5 Da PI: 7.1992

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Z40HV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	182	229	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Aradu.Z40HV 182 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 229 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-15	176	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.25E-9	176	233	No hit	No description
PROSITE profile	PS50888	14.519	178	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-15	179	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-6	182	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEHAALDSIQ FNEQIQGLMA PAPESTNSFT ALLELPPPQA VKLLHSPDKA PTGSEKPPCH 60 ASILKPYPSI MSIIDGTRKL TFPSNTALIE RAARFSVFAG EGPLAPPVAE VKNEPPETDS 120 NPSSTQCDPA VENKGAKRKE REKKVKARSK KSKSVAAAES SGDGEKLPYV HVRVRRGQAT 180 DSHSLAERAR REKINARMKL LQELVPGCNK ISGTALVLDE IINHVQSLQR QVEFLSMKLA 240 AVNPRIHFNL DSIMPNEGAS LMDSSIPNMV SPLMWPEIPN NGNREQYQQP WQFDAFQQPV 300 WGREEENTNF MTPENSMLSY DSSANSGRYG LSFYFTGIF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Z40HV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015949815.1	0.0	transcription factor bHLH48 isoform X5
Refseq	XP_025650720.1	0.0	transcription factor bHLH48 isoform X5
Swissprot	Q8VZ02	2e-81	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A445EDC6	0.0	A0A445EDC6_ARAHY; Uncharacterized protein
STRING	XP_007162273.1	1e-159	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4985	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-85	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]