PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Z4MY7

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 684aa MW: 76569.2 Da PI: 6.9846

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Z4MY7	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00067	89	110	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F + n++rHir H Aradu.Z4MY7 89 KCDKCSREFCSTINYRRHIRAH 110 7*******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.951	88	115	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	90	111	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 684 aa Download sequence Send to blast
MAVSAKEKAK AKAKGYDGSM EVVKTEDRID TIIRQAIGRE PFFTFPRATD TPVQWIQLLH 60 ALDQQGVSNS FPELPGWPLL YPVKVQLQKC DKCSREFCST INYRRHIRAH HRLKKLDKDS 120 TKNRDLLGAY WDKLSIEEAK EVVSFENVML EEVPASSILE ALTTLLQKPG FSSLPQYYLR 180 AGAALLDIVH SQSSCFPLSS QELFTILDDA SEKTCLCGTA VSMQRYIFDG EAGKIGLEPR 240 NLVACTCFLL EQKLVKAWLA DKDAEALRCH RQLVEEEEAA QKRQAEILER RRQKKLRQKD 300 QKAREQRHEA EIEEHIGSAE DDLSAAEASL ATIDSEAHNL ETFIDSAPSY DPFQCSDTNV 360 GLDGVQSSYN LGSDQYIERR SARRPNRRLT AVSRQKGLQK SQWAVANDSH TSQNSTLSKI 420 EVIQKYGTHR DHRVANGSRV WSPKSKPGID RMVPEARVEK EPDLDKDHEV LIGSISITLG 480 NCSQSERNAV ASRADCNVDN LANQNSSQNK PLNPDFVQNG NNMATKLWRP VSWHETKNPL 540 PVQSGETEVN TIHENGDCQN QSDPSCLRSC STDGSDVGFE INVSNTEGIM DPGSLQLLSS 600 HAAKIFLEQR WKEAMSSNHL LLIVSDYEPP GCQEIQDSRM AVCQSSEVTV KRLAAAPKVA 660 KSNHRMKPEK GTKIKYIPKQ KTAA

Sequence ? help Back to Top

Protein Sequence Length: 684 aa Download sequence Send to blast

MAVSAKEKAK AKAKGYDGSM EVVKTEDRID TIIRQAIGRE PFFTFPRATD TPVQWIQLLH  60
ALDQQGVSNS FPELPGWPLL YPVKVQLQKC DKCSREFCST INYRRHIRAH HRLKKLDKDS  120
TKNRDLLGAY WDKLSIEEAK EVVSFENVML EEVPASSILE ALTTLLQKPG FSSLPQYYLR  180
AGAALLDIVH SQSSCFPLSS QELFTILDDA SEKTCLCGTA VSMQRYIFDG EAGKIGLEPR  240
NLVACTCFLL EQKLVKAWLA DKDAEALRCH RQLVEEEEAA QKRQAEILER RRQKKLRQKD  300
QKAREQRHEA EIEEHIGSAE DDLSAAEASL ATIDSEAHNL ETFIDSAPSY DPFQCSDTNV  360
GLDGVQSSYN LGSDQYIERR SARRPNRRLT AVSRQKGLQK SQWAVANDSH TSQNSTLSKI  420
EVIQKYGTHR DHRVANGSRV WSPKSKPGID RMVPEARVEK EPDLDKDHEV LIGSISITLG  480
NCSQSERNAV ASRADCNVDN LANQNSSQNK PLNPDFVQNG NNMATKLWRP VSWHETKNPL  540
PVQSGETEVN TIHENGDCQN QSDPSCLRSC STDGSDVGFE INVSNTEGIM DPGSLQLLSS  600
HAAKIFLEQR WKEAMSSNHL LLIVSDYEPP GCQEIQDSRM AVCQSSEVTV KRLAAAPKVA  660
KSNHRMKPEK GTKIKYIPKQ KTAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	288	295	ERRRQKKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Z4MY7

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015967387.1	0.0	uncharacterized protein LOC107491132
Refseq	XP_015967388.1	0.0	uncharacterized protein LOC107491132
TrEMBL	A0A445CZ22	0.0	A0A445CZ22_ARAHY; Uncharacterized protein
STRING	GLYMA16G30100.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4517	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-132	C2H2-like zinc finger protein