PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.Z82JT

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 402aa MW: 46034.9 Da PI: 9.923

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Z82JT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60	7.2e-19	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk vGFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.Z82JT 11 KFYRNYAKAVGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTADLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 97 6**************98887..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-16	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.741	212	248	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.2E-4	213	245	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0013	223	250	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MTFTTLENVG KFYRNYAKAV GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN 60 PTADLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIHRTIENN 120 KDVGIRPSKT YQSFVVAAGG HREEQAERES DAADFHTVIP CATKSSIEAQ FQHVYTHQKE 180 KANCITGLTN SALGYSVYEI GEQVCSSIFK KFVVIYDSVA AEVKCQCLLF ESRGILCHHA 240 LSVLSFERVT QVSPRYILER WSKKVKRRHT HIKRSHDEPM LEPRSKRFDK LVFRSQNICE 300 FTSESEELTA ILHRAYDNVM VEMEELKAKR KGTCLLSHEE ANLESVNEIQ SPPRIRTRIR 360 PKNRLGSKLD KQIANAAKKK KTKDLNERCP QHILSFLKLH AP

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MTFTTLENVG KFYRNYAKAV GFSTRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN  60
PTADLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIHRTIENN  120
KDVGIRPSKT YQSFVVAAGG HREEQAERES DAADFHTVIP CATKSSIEAQ FQHVYTHQKE  180
KANCITGLTN SALGYSVYEI GEQVCSSIFK KFVVIYDSVA AEVKCQCLLF ESRGILCHHA  240
LSVLSFERVT QVSPRYILER WSKKVKRRHT HIKRSHDEPM LEPRSKRFDK LVFRSQNICE  300
FTSESEELTA ILHRAYDNVM VEMEELKAKR KGTCLLSHEE ANLESVNEIQ SPPRIRTRIR  360
PKNRLGSKLD KQIANAAKKK KTKDLNERCP QHILSFLKLH AP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Z82JT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960283.1	1e-154	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A444X783	0.0	A0A444X783_ARAHY; Uncharacterized protein
TrEMBL	A0A445CBN3	0.0	A0A445CBN3_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-14	FAR1-related sequence 4