PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ZE8WS
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 255aa    MW: 28587.3 Da    PI: 9.8697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ZE8WSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-1399145354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+++E+rRRdriN  +++Lr+l+Pk+      K++Ka+ L  +v ++k+L
  Aradu.ZE8WS  99 KSHSQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGNVVYHVKDL 145
                  79*************************8.....7************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.74896145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1297149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.28E-999148No hitNo description
PfamPF000102.1E-1099145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1499148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-9102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00933189223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVVQPSMPAR PSSSPLPLLC GPFPFSHSPF YFLSFLLQIT VCVCVFRIGV AAAAATIVNI  60
PTQIVPHAYD SAFASLQFQY PWPLAFEGFP EDRAASASKS HSQAEKRRRD RINAQLATLR  120
KLIPKSDKMD KAALLGNVVY HVKDLKRKAM DVSKSITVPS EIDEVTIIEC DPDQDESYAK  180
VKILKHNIVI SVCCDDRPEL FSELIQVLKG LRLINQDHNI FRSSKQLTEV AKQKQQNILK  240
IKNIRKSESK IKKAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ZE8WS
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020982502.11e-140transcription factor bHLH51-like
SwissprotQ9XEF02e-26BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A444WZG61e-108A0A444WZG6_ARAHY; Uncharacterized protein
STRINGXP_007163561.15e-72(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-29bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]