PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ZJZ3Y
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-PHD
Protein Properties Length: 1086aa    MW: 119541 Da    PI: 4.9683
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ZJZ3YgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.25.9e-1395710021156
                   HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56  
                    +e+L + F++n+yp+++++e LA+++gLt +qV+ WF N R   +
  Aradu.ZJZ3Y  957 AIERLYKSFKENQYPDRTTKESLAQETGLTLQQVSKWFDNTRWSFR 1002
                   6899**************************************8766 PP
2PHD37.17.4e-13646701151
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ C++    ++++++lCdg C++ fH+ C++++l +e++p g   wlC+ C++k
  Aradu.ZJZ3Y 646 FCAKCSSkeLSTNNDIILCDGaCERGFHQLCVDPPLLTENIPPGdeGWLCPGCDCK 701
                  699999977777********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.54E-13636704IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.106.8E-12643700IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.78644701IPR019787Zinc finger, PHD-finger
CDDcd155042.40E-26646698No hitNo description
PfamPF006282.4E-10646701IPR019787Zinc finger, PHD-finger
SMARTSM002492.5E-9646699IPR001965Zinc finger, PHD-type
PROSITE patternPS013590647698IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007113.29441004IPR001356Homeobox domain
SMARTSM003891.4E-139461008IPR001356Homeobox domain
SuperFamilySSF466895.13E-139501006IPR009057Homeodomain-like
CDDcd000861.18E-129521005No hitNo description
PfamPF000461.6E-109571002IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-149571011IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1086 aa     Download sequence    Send to blast
EELDQRTLVS LSLSSSFLPI CCASGHYDVP HRHNGELEEF TSPNRSASRK MQTPDAGTEQ  60
CHLSEKTSQV GSECLDNKQG VPGNVLGSSL IDDQASEKMA KSSECLDNKQ SMPSDVLTSS  120
MIDENSNRVA ENPELLDDKQ SMHSDVLTAS VIDEKSNQVS EKMTDGTQCL GNKKNLQGEV  180
LTNCVIDEKS NEVSEKLIEG PEHLASRQSM HSDDALTNSV IDEKSNQVSD KMFECLEHLA  240
NKQSMHGAVL TKSVIDEKLN QVSDKMTESP ECLDNRQSLH GDVLTNSVID EKTNQVYEKM  300
TESPERLDKK QGMHGDVLIN SVIRENSNHV SRKMTESSQC LDNKQSVIDE VLTSHVIDEK  360
SNQVSDKTTE SSQCLHNTQS MPSNVLTSSV IDENSNQGSG KIIRGAVIAL PAQRQRDLKK  420
SCQTAEGSCS HRSTSEQDPS HLSNDKSEIK CEPFSQNGQN VSVEINNPVT GSLVENQMLS  480
VPTQVNTTSA NGLQDPAPAS VDVKNTGLKC SKRNSTATTS MQLSCKGKKS SKLLKKKYML  540
RSLGSSDRAL RSRTREKPKP PESNSNLVDA NNDGNLIDAY SSEGWKGYSL EKLKPEKELQ  600
RAKTEILRRK LKMRDLFRYL DSLCAEGRLP ESVFDSEGEI DSEDIFCAKC SSKELSTNND  660
IILCDGACER GFHQLCVDPP LLTENIPPGD EGWLCPGCDC KDDCIELVND SLGTRLSLED  720
SWERVFPEAA AVDAFNYASA SEKLEDSGHE DQYMGLPSED SEDDDYNPDA PDQDMKVAEE  780
SSSSDFTSDS EDLAATINDN MPPGHGEDIT SASLDDAKKF KGSSKTSKVG KKPSITDELS  840
SLLEADPGQE SYTPVSGKRN VERLDYKKLY DSGCIESKLF LVTFFTTPTR KKNVTGKLTP  900
MSPNRKASNN STHTLRSDGK AEKTNNSAAK SLEGSGKSGS GEKKLRSSTY NRLGDVAIER  960
LYKSFKENQY PDRTTKESLA QETGLTLQQV SKWFDNTRWS FRHSSHKEPR TGENALAQTT  1020
DNISENEVAP AGENRDSELF PQDVTGENSK TPSSKKRKGM SEPLASESPQ NADKASSHKM  1080
KTRKRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527535KKSSKLLKK
2606612LRRKLKM
3607613RRKLKMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ZJZ3Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020987689.10.0homeobox protein HAT3.1
TrEMBLA0A445BF390.0A0A445BF39_ARAHY; Uncharacterized protein
STRINGGLYMA10G40641.10.0(Glycine max)
STRINGGLYMA20G26700.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-81Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain