PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ZKR3M
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 503aa    MW: 57721.6 Da    PI: 9.4173
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ZKR3MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.76.1e-1659145191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+ +++++   +ei+++  +Cs+e k +++ +    +++ + +   +C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.ZKR3M  59 KFYRNYAKAAGFSTRVWSTNRK--GNEIKNQLITCSREKKWKSKISL---TEKMNLTASLNCPARIYIHSLKeVGAWIISKVVLDHSHPCCP 145
                  6***************998777..8889***********99998877...788999999*********988879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1359145IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.149304340IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-4311336IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-4315342IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYDFE SNEVPKQTLG RSVGSLSVVD DQFVPKVGMT FTTLEDAEKF  60
YRNYAKAAGF STRVWSTNRK GNEIKNQLIT CSREKKWKSK ISLTEKMNLT ASLNCPARIY  120
IHSLKEVGAW IISKVVLDHS HPCCPSKAEM LKQHRKLSMS IRRTIENNEE AGIRPSKIYF  180
WVYSADLYEN RHIWVPIYLD HHFWVGMRST QRSESMHSFF NKFITRNNSL IQFVKQYDNC  240
LGSREQAERE SDAADFHTVI PCATKSSIEA QGKANCITRL TNSALGYSVY EVGEQVSSSI  300
FNKFVVTYDS IAAEVKCQCL LFESRGILCR HALSVLNFEQ VSQVSPRYIL ERWSKKVKKR  360
HTHIKSSHNE PLLEPRSKRF DKLVFHSQNI CEFASESEEL TTILHRAYDT VMVEMEELKA  420
KRKATSSLSH EDANLESVNE LQSPPRIRTR GRPKNRLGSK LDKHIKNASK KKKTKALNEL  480
NLFDAGSVVH SNSSQYQGRV MNY
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ZKR3M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444ZZ110.0A0A444ZZ11_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-27far-red elongated hypocotyls 3