PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.ZM6VG
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Whirly
Protein Properties Length: 233aa    MW: 25562.3 Da    PI: 9.5503
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.ZM6VGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly197.32.2e-61581941137
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                  svyk+kaa+++ + +ptf++ldsg+++++r+G++++ ++ +++erkydWe+kq+falsatev++l+++++++sceffhdp++ +sn+G+vrk+l+++P
  Aradu.ZM6VG  58 SVYKGKAAFSLSPCLPTFTKLDSGAVVVDRRGSMMMIFMHSIGERKYDWENKQRFALSATEVGSLISMGPQDSCEFFHDPSMLSSNAGQVRKSLSIKP 155
                  79************************************************************************************************ PP

       Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  ++   G+fv+l+v n+l+++++++svPv+ aefav++++
  Aradu.ZM6VG 156 HASSNGYFVSLTVVNNLLNTKDYLSVPVTTAEFAVMKTA 194
                  *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.4E-7446211IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.41E-6450212IPR009044ssDNA-binding transcriptional regulator
PfamPF085365.8E-5859193IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLKLSRLLPS ISGSSPRLLE PLSFTKPDPR DSAAFSTATN NKYAAKGYTS NRIFAPYSVY  60
KGKAAFSLSP CLPTFTKLDS GAVVVDRRGS MMMIFMHSIG ERKYDWENKQ RFALSATEVG  120
SLISMGPQDS CEFFHDPSML SSNAGQVRKS LSIKPHASSN GYFVSLTVVN NLLNTKDYLS  180
VPVTTAEFAV MKTACSFALP HIMGWDRMTH QSGGTVGLQS KVEPPALDLE WDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A6e-86502098167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B6e-86502098167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C6e-86502098167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D6e-86502098167Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.ZM6VG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968430.11e-174single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
SwissprotD9J0346e-91WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A445CP261e-171A0A445CP26_ARAHY; Uncharacterized protein
STRINGXP_007147230.11e-128(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-90WHIRLY 2