PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.ZN23M

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WRKY

Protein Properties

Length: 181aa MW: 19680.3 Da PI: 8.2462

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.ZN23M	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	55.2	1.4e-17	7	49	17	59
T-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 17 gsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 g+++prsY+rCt gC+v+k+ver+++d k+v+itYeg+ +h+ Aradu.ZN23M 7 GNHNPRSYFRCTNVGCTVRKHVERASHDLKFVIITYEGKQKHH 49 899************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-15	7	51	IPR003657	WRKY domain
SMART	SM00774	1.8E-8	7	50	IPR003657	WRKY domain
PROSITE profile	PS50811	21.161	7	51	IPR003657	WRKY domain
Pfam	PF03106	5.0E-11	7	48	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-13	7	51	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MMVISGGNHN PRSYFRCTNV GCTVRKHVER ASHDLKFVII TYEGKQKHHV PATCSSSHND 60 NATSQDKNDL FWSLFSTSVT QSGSFGCFFV NSEVRLLPLC NDLPFAHLGF WSTTPLVSQI 120 RSSGVAFIIS ITATAFPFPF AEASTVMLLL ASLATSPLKI GDGVEHPQSP PSSASFRQAP 180 S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-14	7	52	33	78	Probable WRKY transcription factor 4
2lex_A	9e-14	7	52	33	78	Probable WRKY transcription factor 4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.ZN23M

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Gorai.004G034600.1	1e-19	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-20	WRKY DNA-binding protein 33