PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.ZQX8T

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 433aa MW: 47061.4 Da PI: 6.8684

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.ZQX8T	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.9	1.3e-34	208	262	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fv+av+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ Aradu.ZQX8T 208 KPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 262 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.169	205	265	IPR017930	Myb domain
SuperFamily	SSF46689	3.76E-18	206	262	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-32	207	264	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.2E-25	208	262	IPR006447	Myb domain, plants
Pfam	PF00249	6.8E-10	210	261	IPR001005	SANT/Myb domain
Pfam	PF14379	4.8E-24	294	339	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MEARPSISIE RSSAEKHNVM GMSGALSSSL AVLPTPLEET YNKLPDSPLA FVEEGLMSGP 60 LTHSGHLNNN GAVGHIFSSS PGYSTALHHS SLSPHEKHSR NAHIISHSST NMATLPPFSS 120 NSGPLPSKPS RHFPNENSAS WHTDSVPSFL DFPANTSIDS GREPFQVSKP SLQLPGHPSE 180 GHQQLPASSE ENCAGAAPSS SAKSAPSKPR MRWTPELHEA FVDAVNQLGG SERATPKGVL 240 KLMKVEGLTI YHVKSHLQKY RTARYRPDSS EGVSEKKTSS IEEMASLDLR TGIDITEALR 300 LQMVVQKQLH EQLEIQRNLQ LRIEEQGRYL QMMFEKQCKP ETEMFKASLS TAENPSGSSL 360 DAMQDVPAKS ASMVDNYKPG PDQAIGSTKV VEGSVEIGGK HDSPKTQLSE NPKQHANAND 420 DAAQASKRQR KDE

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MEARPSISIE RSSAEKHNVM GMSGALSSSL AVLPTPLEET YNKLPDSPLA FVEEGLMSGP  60
LTHSGHLNNN GAVGHIFSSS PGYSTALHHS SLSPHEKHSR NAHIISHSST NMATLPPFSS  120
NSGPLPSKPS RHFPNENSAS WHTDSVPSFL DFPANTSIDS GREPFQVSKP SLQLPGHPSE  180
GHQQLPASSE ENCAGAAPSS SAKSAPSKPR MRWTPELHEA FVDAVNQLGG SERATPKGVL  240
KLMKVEGLTI YHVKSHLQKY RTARYRPDSS EGVSEKKTSS IEEMASLDLR TGIDITEALR  300
LQMVVQKQLH EQLEIQRNLQ LRIEEQGRYL QMMFEKQCKP ETEMFKASLS TAENPSGSSL  360
DAMQDVPAKS ASMVDNYKPG PDQAIGSTKV VEGSVEIGGK HDSPKTQLSE NPKQHANAND  420
DAAQASKRQR KDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-31	208	266	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-31	208	266	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-31	208	266	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-31	208	266	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-31	208	266	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-31	208	266	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-31	208	266	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-31	208	266	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.ZQX8T

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB573724	1e-150	AB573724.1 Lupinus albus LaMYB-CC5 mRNA for MYB-CC transcription factor, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016182990.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
Refseq	XP_016182991.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
Refseq	XP_025632529.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
Swissprot	Q8GUN5	3e-75	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	A0A445AFC8	0.0	A0A445AFC8_ARAHY; Uncharacterized protein
STRING	GLYMA13G18805.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1512	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	1e-72	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]