PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0005s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 331aa    MW: 38251.6 Da    PI: 9.3434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0005s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-05245267123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+Cp+C+ +F ++  +  H+++H
  Araha.0005s0004.1.p 245 YTCPKCNGVFDTSQKFAAHMSSH 267
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0096245267IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369245272IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSSIPNKFNL HCDDTNNRGF SSIQMNQNSK MVQSMFISSD HTNHGDLFSS SPSLTCFQNS  60
HVSSSSFGFK SSHVKNQMMR RNIISGDNYF PIKNNPHFTR VSFTQSITNR YTAIIPTNTL  120
DTVQYDIQRV KRAMYSKTNI WNPKFFPPNI FDKQCELLNP KPLNVIFPRQ DSAYSQHSDM  180
FSLSSKHNYD QRVPQNGHFL EKILKPTSFF GTSTDYIESE KNKKSNDDQY DGRTHSLPYE  240
KYGPYTCPKC NGVFDTSQKF AAHMSSHYKN ETSEEREQRL RAKNKRKYCK LNHEIHSESQ  300
KSKQEDLVNS GEKNDDKAFQ HLAIVKEELV *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0005s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935480.0AB493548.1 Arabidopsis thaliana At2g15740 gene for hypothetical protein, partial cds, clone: RAAt2g15740.
GenBankAC0062480.0AC006248.4 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885976.10.0uncharacterized protein LOC9319985
TrEMBLD7L4F80.0D7L4F8_ARALL; Zinc finger family protein
STRINGscaffold_303767.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-180C2H2-like zinc finger protein