PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0049s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 200aa    MW: 22854.2 Da    PI: 6.0863
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0049s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-162368148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg++T+ E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Araha.0049s0001.1.p 23 RGNFTPHEEDTIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 68
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.054417IPR017877Myb-like domain
SuperFamilySSF466893.09E-21475IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-11429IPR009057Homeodomain-like
PROSITE profilePS5129423.3841872IPR017930Myb domain
SMARTSM007178.2E-142270IPR001005SANT/Myb domain
PfamPF002492.0E-142368IPR001005SANT/Myb domain
CDDcd001672.48E-92568No hitNo description
Gene3DG3DSA:1.10.10.601.3E-223069IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
GLLRCGKSCR LRWINYLRPD IKRGNFTPHE EDTIINLHQI LGNRWSAIAA KLPGRTDNEI  60
KNVWHTHLKK RLHHNQDQNN KENFVSPQQQ SSSSADISEI TTSGNNNDIS NNNKDSATSS  120
SKDVLAVIDE SFWSEVVLMD CNISGDGEKN EKKIENWEGS LDYKNDKGYN YSKLDNHDME  180
FWFDHLTSSR IVGEICDIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1847240108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0049s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934371e-125AB493437.1 Arabidopsis thaliana At1g06180 mRNA for hypothetical protein, partial cds, clone: RAAt1g06180.
GenBankAY5195501e-125AY519550.1 Arabidopsis thaliana MYB transcription factor (At1g06180) mRNA, complete cds.
GenBankBT0251731e-125BT025173.1 Arabidopsis thaliana At1g06180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870498.11e-125transcription factor MYB14
SwissprotQ9LNC91e-108MYB13_ARATH; Transcription factor MYB13
TrEMBLD7KFB71e-117D7KFB7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__590__AT1G06180.11e-118(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-101myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]