PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.0121s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 494aa    MW: 56472 Da    PI: 7.9911
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.0121s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix105.83e-33334428186
             trihelix   1 rWtkqevlaLiearr..........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                          rW+k+evlaLi++rr          +++++l++++++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+tcp
  Araha.0121s0001.1.p 334 RWPKDEVLALINIRRsisnmndddhKDDNTLSTSSKAVPLWERISKKMLEIGYQRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCP 422
                          8*********************9999999***************************************************8.9******* PP

             trihelix  81 yfdqle 86 
                          yf+ql+
  Araha.0121s0001.1.p 423 YFHQLT 428
                          ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-19333429No hitNo description
CDDcd122032.10E-25333408No hitNo description
PROSITE profilePS500906.969334401IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MIVRRNPVII RRNPLAEVGF KRSPQECKEK FEEEERRYFN SNNNNNNTND HPHIGNYNNN  60
KGNNYRVFSE VEEFYDVSSE VGDNQNKRNN SVEAKGNVGE TVTGQDLMEE DKLRDHDQGQ  120
VEEASMENKI NSIEVGKVGN VEEDAKSSSS SSLMMIIKEK KKRKKKKQKE RFGVLKGFCE  180
GLVRNMISQQ EEMHKKILED MVKKEEEKIA REEAWKKQDI ERVNKEVEIR AQEQAMASDR  240
NTNIIKFISK FTDHDLDVVQ NPTSPSQDSS SLALPKTQGR RKFQTISSLL PQTLTPHNPL  300
TNDKSLEPTK TLKTKTQTPK LPKSDDKSDD LGKRWPKDEV LALINIRRSI SNMNDDDHKD  360
DNTLSTSSKA VPLWERISKK MLEIGYQRSA KRCKEKWENI NKYFRKTKDV NKKRPLDSRT  420
CPYFHQLTAL YSQPSTGTTT TATTTSAGDL ETRPDEENRV GSEDNDISVA MHVDGDGAGD  480
KSNVQFSGFD LEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KKRKK
2160166KKRKKKK
3161169KRKKKKQKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.0121s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3869630.0AF386963.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankAY0814840.0AY081484.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBankBT0004610.0BT000461.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankBT0083890.0BT008389.1 Arabidopsis thaliana At5g28300 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT8M170.0AF296835.1 Arabidopsis thaliana BAC T8M17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878175.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLD7M6U60.0D7M6U6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__2781__AT5G28300.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]